Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D21
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    26   0.26 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 13  FIFDLPQRESXNQ*NLRNIGVQFSILTDCVF*T 111
           F  D  ++++ N  NL N  V+F ++TDC+F T
Sbjct: 44  FSKDFYRQDTKN--NLLNAYVRFKLVTDCIFVT 74


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 176 IILNIYLFYSVTC*FCGAMNKYAVLFNLKKIL 271
           +I+N+ L   V C  C  +   + L+ LK  L
Sbjct: 13  VIINVLLHGQVICFVCKDITSTSALYRLKLYL 44


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 331 FSFRYIFSFCVYNCG 287
           F++RY FSF +Y  G
Sbjct: 223 FTYRYGFSFLLYVSG 237


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 287 TTIINAEGKNVPKRKNFENRITL 355
           +TI    G N     NFE+R+T+
Sbjct: 17  STIAKIIGINAANFSNFEDRVTM 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,368
Number of Sequences: 438
Number of extensions: 2208
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)