Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_D19
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 90 2e-19
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 53 4e-08
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 46 5e-06
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 44 2e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 42 8e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 42 8e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 30 0.25
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 30 0.33
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 29 0.76
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 28 1.3
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 2.3
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.1
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 7.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.1
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.4
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 90.2 bits (214), Expect = 2e-19
Identities = 38/76 (50%), Positives = 60/76 (78%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+ L++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 438 VIRGNSIIMLESLHRL 485
IRGNS+IM+E+L ++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKD-------GQRNNVGMV 437
+L ++ D+++ GR +TG+L+GFD MNL LD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 438 VIRGNSIIML 467
V+RG +++++
Sbjct: 87 VVRGTTLVLI 96
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNV-GMVVIRGNSI 458
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 459 IMLESL 476
+ + +L
Sbjct: 68 LYVSAL 73
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEEC-KDGQRNNV--GMVVIRGN 452
L ++D+K+ + L G+ + G+LR FD F NL L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 453 SIIMLESL 476
++++L L
Sbjct: 76 NVVLLGEL 83
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEEC----KDGQRNNVGMVVIRG 449
L FM++++ + N GR V G L+GFD NL L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 450 NSIIML 467
++ M+
Sbjct: 63 ENVAMV 68
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 41.9 bits (94), Expect = 8e-05
Identities = 14/45 (31%), Positives = 32/45 (71%)
Frame = +3
Query: 342 GVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 476
G +RGFD FMN+ LD++V+ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNV---------- 428
++ ++ L++ GR G L FD FMNL L + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63
Query: 429 --GMVVIRGNSIIML 467
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 300 KKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQR-NNVGMVVIRGNSI 458
+ + ++L G G L D +MNL L E + DG + + IRGN+I
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNI 66
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 466 WNLYTDFSTLXVGXKYHQCCKCASLFI 546
WNL TD TL H C KC SLFI
Sbjct: 39 WNLETDPKTLL-----HGCSKCGSLFI 60
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 285 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLD 386
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 536 EAHLQHW*YXLPTXSVLK--SV*RFQHYNTV 450
++H HW Y LPT + LK SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 473 RFQHYNTVTTNYHHPNIVTL 414
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEE 401
PEL K +D + + G G + F+PFM L L ESV++
Sbjct: 195 PELTKLVDFCKNHESTTGHFTIGDEKKFNPFMCLGL-ESVQK 235
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 364 GSKPRNTPVTARPAFSFIDNFLSMNF 287
GSKP NT V A S ++ ++MNF
Sbjct: 924 GSKPVNTNVEALTTISSMNQAVNMNF 949
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 440 YHHPNIVTLTVFTLLD*FIKX*IHEWIKTAQHTGNSAT 327
Y+ P + VF L+ F+ +H W K + GN+AT
Sbjct: 185 YYAP--IVFYVFNLMGFFLAA-LHPWTKVVRGDGNAAT 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,598
Number of Sequences: 5004
Number of extensions: 44016
Number of successful extensions: 127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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