Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_D19
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 92 4e-19
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 80 1e-15
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 49 3e-06
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 42 6e-04
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 40 0.002
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 36 0.021
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 36 0.028
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 33 0.26
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 31 0.79
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 29 3.2
07_01_0479 + 3606663-3607448 29 4.2
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 29 4.2
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 28 7.4
05_04_0250 + 19370155-19370690,19370888-19370948,19371240-193712... 28 7.4
03_06_0684 + 35531167-35532899,35533360-35533596,35533870-355340... 28 7.4
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +3
Query: 258 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGM 434
MS++ PP+LKK+MDKKL IKLNA R + G LRGFD FMNL +D +V E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 435 VVIRGNSIIMLESL 476
VV+RGNS++M+E+L
Sbjct: 60 VVVRGNSVVMIEAL 73
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 80.2 bits (189), Expect = 1e-15
Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 15/88 (17%)
Frame = +3
Query: 258 MSKA-HPPELKKFMDKKLS--------------IKLNAGRAVTGVLRGFDPFMNLXLDES 392
MS++ PP+LKK+MDKKL +KLNA R V G LRGFD FMNL +D +
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 393 VEECKDGQRNNVGMVVIRGNSIIMLESL 476
V E ++N++GMVVIRGNS++M+E+L
Sbjct: 61 V-EVNGNEKNDIGMVVIRGNSVVMIEAL 87
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 15/78 (19%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGR-------AVTGVLRGFDPFMNLXLDESVE---ECKD-----G 413
+L KF+DK + +KL GR +VTG L+G+D +NL LDE+VE E D G
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSG 69
Query: 414 QRNNVGMVVIRGNSIIML 467
+ +G++V RG +++++
Sbjct: 70 KTRQLGLIVCRGTAVMLV 87
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVE 398
P L+ +D+ +S+ N GR + G LRGFD N+ LDES E
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 252 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNNV 428
+T+ P L K + +KL G G L D +MNL L + EE DGQ N+
Sbjct: 53 VTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNL 111
Query: 429 GMVVIRGNSIIMLESL 476
G ++IR N+++ L +
Sbjct: 112 GEILIRCNNVLYLRGV 127
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +3
Query: 351 RGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIML 467
+GFD +MNL LDE+ E K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 35.9 bits (79), Expect = 0.028
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIML 467
+ G + GFD +MNL LD++ E K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 342 GVLRGFDPFMNLXLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESLHR 482
G+L D +MN+ ++++ EE +GQ +N G IRGN+++ + + R
Sbjct: 433 GILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNVLYISTSKR 479
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 342 GVLRGFDPFMNLXLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 476
G L D +MNL L + EE DGQ N+G ++IR N+++ L +
Sbjct: 44 GYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVLYLRGV 88
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN-NVGMVVIRGNSI 458
LK + ++L G G L D +MN+ L E + KDG + + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTI 66
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVE 398
MS ++ +F++ ++ + + GR + G FD MNL L + E
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Frame = +3
Query: 294 MDKKLSIKLNAGRAVTGVLRGFDPFMNLXL-------------DESVEECKDGQRNNVGM 434
+D+++ +KL + R + G L +D +N+ L DE+ EE + +
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPF 86
Query: 435 VVIRGNSIIML 467
+ +RG+ +I++
Sbjct: 87 LFVRGDGVILV 97
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 360 DPFMNLXLDESVEECKDGQRNNVGMVVIR--GNSIIMLESLH 479
DPF N + + +EEC D QR + + R G I + ++H
Sbjct: 466 DPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMH 507
>05_04_0250 +
19370155-19370690,19370888-19370948,19371240-19371261,
19372395-19372452,19372580-19372652,19372907-19372999
Length = 280
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 122 SAATSKIK*EPLTRRYYDYNFGNYRXWTSTISEVRTGQ 9
SA T K+K E R YY Y FG + + ++ V +G+
Sbjct: 213 SARTIKVKDEDDIRTYYFYEFGVDKEHVAVMATVNSGK 250
>03_06_0684 +
35531167-35532899,35533360-35533596,35533870-35534032,
35534112-35534174
Length = 731
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = -1
Query: 264 LTL*CAF*NIIIRN*CYCRGFLYIR*ISNPSNFVNEFNFXTIXYRXRQCCHFQN*IRTFD 85
L L CA N+ C C R + N V+EF+ + Y C H IR FD
Sbjct: 144 LVLSCALVNMY----CKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCGHLHEAIRLFD 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,386
Number of Sequences: 37544
Number of extensions: 246336
Number of successful extensions: 475
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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