Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D19
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              29   2.5  
SB_45516| Best HMM Match : I-set (HMM E-Value=1.1e-26)                 28   7.5  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 28   7.5  
SB_51737| Best HMM Match : Intron_maturas2 (HMM E-Value=7.9)           27   9.9  

>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 348 THR*QRDPHSALLTIFCP*IFSILVDVLLTL 256
           +H+ Q DPH+A L++ C  ++S   D L+ +
Sbjct: 139 SHKAQEDPHNAFLSLLCHVVYSAEPDWLMNI 169


>SB_45516| Best HMM Match : I-set (HMM E-Value=1.1e-26)
          Length = 939

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 461 NAGIFTQTLVHLXWAXNITNAVNVLHFSSINKYK 562
           N  + TQ  +H+ WA + T    ++HF+   KYK
Sbjct: 556 NVNVRTQNSLHVQWAVSDTGQSKIMHFTL--KYK 587


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 356
           +S A P ++K  +DK + IKLN G   T  L G
Sbjct: 249 VSHAEPADIKAALDKLVVIKLNGGLGTTMGLVG 281


>SB_51737| Best HMM Match : Intron_maturas2 (HMM E-Value=7.9)
          Length = 247

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 387 ESVEECKDGQRNNVGMVVIRGNSIIMLESLHRL*YTXSG 503
           E  E    G+RNNVG ++  G S+  L+  + L +   G
Sbjct: 198 EQAESDTSGRRNNVGFLLTSGTSVEFLKLFNPLKFCNCG 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,010,099
Number of Sequences: 59808
Number of extensions: 302887
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)