Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_D19
(648 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 128 2e-29
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 128 2e-29
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 128 2e-29
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 128 2e-29
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 128 2e-29
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 128 2e-29
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 128 2e-29
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 128 2e-29
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 128 2e-29
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 101 2e-21
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 57 6e-08
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 57 6e-08
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 57 6e-08
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 46 9e-05
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 46 9e-05
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 46 9e-05
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 46 9e-05
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 42 0.002
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 41 0.004
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 41 0.004
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 41 0.004
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 41 0.004
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 40 0.008
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 40 0.008
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 40 0.008
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 40 0.008
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 40 0.008
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 40 0.008
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 40 0.008
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 40 0.008
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 38 0.041
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 38 0.041
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 38 0.041
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 33 0.88
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 33 0.88
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 33 0.88
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 33 0.88
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 33 0.88
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 33 0.88
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 128 bits (308), Expect = 2e-29
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 101 bits (243), Expect = 2e-21
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +3
Query: 294 MDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNSIIMLES 473
MDKKLS+KLN GR V G+LRGFDPFMNL +DE VE GQ+NN+GMVVIRGNSIIMLE+
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 60
Query: 474 LHRL 485
L R+
Sbjct: 61 LERV 64
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKD--------GQRNNVGM 434
+L K++DK + +K GR +G+L+GFDP +NL LD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 435 VVIRGNSIIML 467
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKD--------GQRNNVGM 434
+L K++DK + +K GR +G+L+GFDP +NL LD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 435 VVIRGNSIIML 467
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 56.8 bits (131), Expect = 6e-08
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKD--------GQRNNVGM 434
+L K++DK + +K GR +G+L+GFDP +NL LD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 435 VVIRGNSIIML 467
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 252 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNN 425
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 426 VGMVVIRGNSIIMLESLHR 482
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 252 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNN 425
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 426 VGMVVIRGNSIIMLESLHR 482
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 252 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNN 425
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 426 VGMVVIRGNSIIMLESLHR 482
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 46.4 bits (105), Expect = 9e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 252 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNN 425
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 426 VGMVVIRGNSIIMLESLHR 482
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Frame = +3
Query: 327 GRAVTGVLRGFDPFMNLXLDESVEECKD--------GQRNNVGMVVIRGNSIIML 467
GR +G+L+GFDP +NL LD ++E +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN----NVGMVVIRG 449
L+ ++++ +++ + GR + G L+GFD +NL LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 450 NSIIML 467
+++ ++
Sbjct: 65 DNVAVI 70
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN----NVGMVVIRG 449
L+ ++++ +++ + GR + G L+GFD +NL LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 450 NSIIML 467
+++ ++
Sbjct: 65 DNVAVI 70
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN----NVGMVVIRG 449
L+ ++++ +++ + GR + G L+GFD +NL LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 450 NSIIML 467
+++ ++
Sbjct: 65 DNVAVI 70
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN----NVGMVVIRG 449
L+ ++++ +++ + GR + G L+GFD +NL LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 450 NSIIML 467
+++ ++
Sbjct: 65 DNVAVI 70
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.9 bits (89), Expect = 0.008
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN----NVGMVVIRG 449
L+ ++++ +++ + GR + G L+GFD +NL LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 450 NSI 458
+++
Sbjct: 65 DNV 67
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 476
+ G + GFD +MNL LD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 37.5 bits (83), Expect = 0.041
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 261 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDE--SVEECKDGQR-NNV 428
S+ P EL K + ++ I + + + + G L GFD F+N+ L++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 429 GMVVIRGNSIIML 467
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 37.5 bits (83), Expect = 0.041
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 261 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDE--SVEECKDGQR-NNV 428
S+ P EL K + ++ I + + + + G L GFD F+N+ L++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 429 GMVVIRGNSIIML 467
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 37.5 bits (83), Expect = 0.041
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 261 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDE--SVEECKDGQR-NNV 428
S+ P EL K + ++ I + + + + G L GFD F+N+ L++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 429 GMVVIRGNSIIML 467
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.88
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 456 IIMLESL 476
++ + +
Sbjct: 69 VLYIRGV 75
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.88
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 456 IIMLESL 476
++ + +
Sbjct: 69 VLYIRGV 75
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.88
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 456 IIMLESL 476
++ + +
Sbjct: 69 VLYIRGV 75
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.88
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 456 IIMLESL 476
++ + +
Sbjct: 69 VLYIRGV 75
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.88
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 456 IIMLESL 476
++ + +
Sbjct: 69 VLYIRGV 75
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 33.1 bits (72), Expect = 0.88
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 456 IIMLESL 476
++ + +
Sbjct: 69 VLYIRGV 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,615,538
Number of Sequences: 237096
Number of extensions: 1444043
Number of successful extensions: 2271
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2271
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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