Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_D19
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 107 5e-24
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 107 5e-24
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 48 4e-06
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 38 0.006
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 37 0.014
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 31 0.53
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 31 0.93
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 29 2.1
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 29 2.1
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 29 2.1
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 107 bits (258), Expect = 5e-24
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+ +DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNS++++E R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 107 bits (258), Expect = 5e-24
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+ +DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 438 VIRGNSIIMLESLHRL 485
VIRGNS++++E R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNV--------GM 434
+L +F+DK++ +K GR +GVLRGFD +N+ LD+ E +D Q +V G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 435 VVIRGNSIIML 467
+V RG +I ++
Sbjct: 75 IVARGTAITVV 85
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Frame = +3
Query: 258 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNNV 428
MSK P LKK + K + +KLN+G G+L D +MN+ L+++ EE +GQ +N
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQT-EEYSNGQLQNKY 59
Query: 429 GMVVIRGNSIIMLES 473
G IRGN+++ + +
Sbjct: 60 GDAFIRGNNVLYIST 74
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 342 GVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 473
G + GFD FMN+ DE+ E K RN +G ++++G++I ++ +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNS 455
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 456 II 461
++
Sbjct: 71 VL 72
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +3
Query: 252 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECK-------- 407
+T+SK + ++ ++ ++ I L GR G + FD MN+ L E E +
Sbjct: 1 MTISKNN--KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK 58
Query: 408 -DGQRNNV-GMVVIRGNSIIML 467
DG+ + G+V++RG I+ +
Sbjct: 59 TDGEEKRILGLVLVRGEHIVSM 80
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 355 PRNTPVTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNTELML 215
P PVT RPA N SM ++S C F + +C + EL+L
Sbjct: 1709 PAGIPVTGRPALKLEMNCTSMKHYDSFDC-FRLKVCDMSVQLDELLL 1754
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 306 LSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNSI 458
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQR-NNVGMVVIRGNSI 458
LK + + ++L G G L+ D +MN+ L + + KDG + + +RG++I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 306 LSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMVVIRGNSI 458
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
ZK1193.2 protein.
Length = 1250
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 195 YTKIHDNNINSVL*YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGF-DP 365
YT I+ NNI SV+ Y + P ++KF+ S + G G GF DP
Sbjct: 1131 YTGINGNNIQSVMDYIVLQNNSAPFRPAPVRKFLMLLSSQGWDKGNVSEGKENGFSDP 1188
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 365
+ K + P+ K DKK +IKL GR ++ DP
Sbjct: 248 LGKGYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDP 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,797
Number of Sequences: 27780
Number of extensions: 245009
Number of successful extensions: 500
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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