Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_D19
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 92 3e-19
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 90 1e-18
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 59 3e-09
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 59 3e-09
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 49 3e-06
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 47 9e-06
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 46 3e-05
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 46 3e-05
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 43 2e-04
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 42 5e-04
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 39 0.003
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 37 0.010
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 36 0.018
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 35 0.041
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 31 0.87
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 31 0.87
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 30 1.2
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 30 1.2
At5g55560.1 68418.m06923 protein kinase family protein contains ... 30 1.5
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 30 1.5
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 28 4.7
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 28 4.7
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 27 8.1
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 91.9 bits (218), Expect = 3e-19
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +3
Query: 258 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGM 434
MS++ PP+LKK+MDKKL IKLNA R VTG LRGFD FMNL +D +V E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 435 VVIRGNSIIMLESL 476
VVIRGNSI+ +E+L
Sbjct: 60 VVIRGNSIVTVEAL 73
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +3
Query: 258 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGM 434
MS++ PP+LKK+MDKKL IKLNA R V G LRGFD FMNL +D +VE D + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGD-DKTDIGM 59
Query: 435 VVIRGNSIIMLESL 476
VVIRGNSI+ +E+L
Sbjct: 60 VVIRGNSIVTVEAL 73
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKD--------GQRNNVGM 434
+L KF+DK + +KL GR VTG L+G+D +NL LDE+VE +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 435 VVIRGNSIIML 467
+V RG +++++
Sbjct: 70 IVCRGTAVMLV 80
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Frame = +3
Query: 279 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKD--------GQRNNVGM 434
+L KF+DK + +KL GR VTG L+G+D +NL LDE+VE +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 435 VVIRGNSIIML 467
+V RG +++++
Sbjct: 70 IVCRGTAVMLV 80
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVE---ECKDG-QRNNVGMVVIRG 449
L+ +D+ +S+ N GR + GVL+GFD N+ LDES E K+G Q++ +G+ +IRG
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRG 66
Query: 450 NSIIMLESL 476
++I ++ L
Sbjct: 67 DNIGVIGEL 75
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN---NVGMVVIRGN 452
L ++DKKL + L GR + G+LR FD F N L+E+ E G +G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 453 SIIMLESL 476
+++++ L
Sbjct: 75 NVVLIGEL 82
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN---NVGMVVIRGN 452
L ++D+KL + L GR + G LR FD F N L+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 453 SIIMLESL 476
+++++ L
Sbjct: 75 NVVLIGEL 82
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN---NVGMVVIRGN 452
L ++D+KL + L GR + G LR FD F N L+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 453 SIIMLESL 476
+++++ L
Sbjct: 75 NVVLIGEL 82
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNNVGMVVIRGNSI 458
LK K + +KLN+G G+L D +MN+ ++++ EE +GQ +N G +RGN++
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQT-EEYVNGQLKNTYGDAFVRGNNV 77
Query: 459 IMLES 473
+ + +
Sbjct: 78 LYIST 82
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNNVGMVVIRGNSI 458
LK + + +KLN+G G L D +MN+ ++++ EE +GQ +N G IRGN++
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNV 77
Query: 459 IMLESLH 479
+ + +++
Sbjct: 78 LYISTVN 84
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 276 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQ-RNNVGMVVIRGN 452
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCN 68
Query: 453 SIIMLESL 476
+++ + +
Sbjct: 69 NVLYVRGV 76
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIML 467
+ G + GFD +MNL LDE+ E K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 336 VTGVLRGFDPFMNLXLDESVE-ECKDGQRNNVGMVVIRGNSIIML 467
+ G + GFD +MNL LDE+ E K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +3
Query: 261 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDE--SVEECKDGQR-NNV 428
S+ P EL + + K+ + + + + G+L+GFD ++N+ L++ E +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 429 GMVVIRGNSIIML 467
+++ GN+I +L
Sbjct: 66 DQILLNGNNIAIL 78
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 30.7 bits (66), Expect = 0.87
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECK----DGQ--- 416
MS + ++ +F++ ++ + + GR + G FD MNL L + E K G+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 417 -----RNNVGMVVIRGNSIIML 467
R +G+V++RG +I +
Sbjct: 61 EEREDRRTLGLVLLRGEEVISM 82
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 30.7 bits (66), Expect = 0.87
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECK----DGQ--- 416
MS + ++ +F++ ++ + + GR + G FD MNL L + E K G+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 417 -----RNNVGMVVIRGNSIIML 467
R +G+V++RG +I +
Sbjct: 61 EEREDRRTLGLVLLRGEEVISM 82
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVE-----ECKDGQRN 422
MS + ++ +F++ ++ + + GR + G FD MNL L + E K ++
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 423 N--------VGMVVIRGNSIIML 467
N +G+V++RG +I +
Sbjct: 61 NEEREERRTLGLVLLRGEEVISM 83
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRN-NVGMVVIRGNSI 458
LK + ++L G G L D +MN+ L E + KDG R + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 66
>At5g55560.1 68418.m06923 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 314
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +3
Query: 258 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLXLDESVEECKDGQRNNVGMV 437
++K + PE K F++K ++ + A + +L DPF + LD+ E+ ++ N G +
Sbjct: 255 LNKVNDPEAKAFIEKCIA-QPRARPSAAELL--CDPFFDGILDDDDEDGENNDNNGAGRI 311
Query: 438 VI 443
V+
Sbjct: 312 VV 313
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Frame = +3
Query: 294 MDKKLSIKLNAGRAVTGVLRGFDPFMNLXL-------------DESVEECKDGQRNNVGM 434
+D+++ +KL + R + G L FD +N+ L DE+ EE + +
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79
Query: 435 VVIRGNSIIML 467
+ +RG+ +I++
Sbjct: 80 LFVRGDGVILV 90
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 340 VTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNT 227
+ +R + + LS+ F SGG FD++ ++++ T
Sbjct: 245 IISREVDPLLSHVLSVTFMKSGGSEFDVIPAYVEFGGT 282
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Frame = +3
Query: 294 MDKKLSIKLNAGRAVTGVLRGFDPFMNLXL-------------DESVEECKDGQRNNVGM 434
+++++ +KL + R + G L FD +N+ L DE+ EE + V
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 435 VVIRGNSIIML 467
+ +RG+ +I++
Sbjct: 80 LFVRGDGVILV 90
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 282 LKKFMDKK--LSIKLNAGRAVTGVLR-GFDPFMNLXLDESVEECKDGQRNNV 428
L+KF+D+ + + + + V+ G DPF N + + +E C + QR +
Sbjct: 259 LQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQI 310
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,006
Number of Sequences: 28952
Number of extensions: 215599
Number of successful extensions: 489
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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