Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    38   0.002
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   2.4  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   3.1  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   5.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   7.2  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   7.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
 Frame = +1

Query: 211 IAGEMAGSGVLALPRALVRTGWIGVPIIILMCLVAAFSGKR-LGDCWTILEERNPQLXSX 387
           +A  + G+G+L+LP A  +TG +   + I+    A+F G   +  C      R P+    
Sbjct: 28  LANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQC----AARLPR---- 79

Query: 388 XRNPYAIIADQTLGKTXSVVVSMAIIVTLFGASVVYLLMAA----XXXXXXXXXXXXXXX 555
            +  +A +A  T   + +VV   +I V  FG +V YL++                     
Sbjct: 80  GKASFAAVAKHTF-PSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLR 138

Query: 556 XXXWYLIVVGAMTPLIFFNSPKDLTFTGVIA 648
              W +  +  +TPL F      L  T VI+
Sbjct: 139 RQTWIVFALFVLTPLSFLKRLDSLRHTSVIS 169


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 519 DDXSCHQQVHDRSSKEGYNDRHGHDH 442
           D  S H+  H+ S +  +   H HDH
Sbjct: 525 DHVSQHEHTHENSQEHHHEHNHNHDH 550


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 651 EGDYTSEGQILRAVKEDKRSHGSDHDQVPSAN 556
           EGD   EG  + + +    +HG+DH  + S N
Sbjct: 685 EGDRNEEGSEINSSQPSTINHGTDHINIVSEN 716


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 516 DXSCHQQVHDRSSKEGYNDRHGHDH 442
           D S H   HD       +D HGHDH
Sbjct: 12  DDSTHHHTHDYDHHN--HDHHGHDH 34


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 354 NGPAVTESLATEGRHQAHQNDNGNTNPSSPDKGSRESQDSAACHLSGDQHT 202
           +G +  ES ++    ++   DN +++ SS  +    S+DS +   S D  +
Sbjct: 105 SGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 155



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 29/157 (18%), Positives = 57/157 (36%)
 Frame = -3

Query: 651 EGDYTSEGQILRAVKEDKRSHGSDHDQVPSANGQCWDQSE*ELFDDXSCHQQVHDRSSKE 472
           E + +SE     +   D  S  S  D   S++      SE E   + S        S  E
Sbjct: 118 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS---DSESESSSEGSDSSSSSSSSESE 174

Query: 471 GYNDRHGHDHAXGLAESLISNNSVWVPXXAXQLRIAFLQNGPAVTESLATEGRHQAHQND 292
             ++ +    +   +ES  S+        +          G + + S ++    ++   D
Sbjct: 175 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEG-SDSSSSSSSSESESSSED 233

Query: 291 NGNTNPSSPDKGSRESQDSAACHLSGDQHTRLPNAES 181
           N +++ SS  +    S+DS +   S D  +   + +S
Sbjct: 234 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDS 270


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
 Frame = -3

Query: 501 QQVHDRSS---KEGYNDRHGHDHAXGLAESLISNNSVWVPXXAXQLRIAFLQNGPAVTES 331
           QQ H  +S   K   +D  G D +     +  + +S+W       L  A     P    S
Sbjct: 42  QQRHGTNSFNGKPSVHDSVGSDASVSNGHNNHNESSLWTSGIPKALEEATKSKKPDSLVS 101

Query: 330 LATEGRHQAHQ---NDNGNTNPSS-PDKGSRESQDSA 232
            +T G   AH     +  N  PS  P+  SR S  S+
Sbjct: 102 TSTSGCASAHSVGYQNIDNLIPSPLPESASRSSSQSS 138


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
 Frame = -3

Query: 414 SNNSVWVPXXAXQLRIAFLQNGPAVTESLATEGR------HQAHQNDNGNTNPSSPDKGS 253
           SN   W+P           QN   +   +   G       +  +Q D+G+   S+PD   
Sbjct: 439 SNLKPWMPHPEGYREFGREQNNATLKSHIGLNGETTELIENTDNQGDSGSFQTSTPDDSR 498

Query: 252 RESQDSAACHLSGDQ 208
            E   ++A ++  D+
Sbjct: 499 PEQNQASATYIRPDK 513


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 459  DHCNPLWSFGRVPA-DGSSXHRTTPTHSDPNIDHLHLVP 572
            + CN    +G +    GSS  R T  HS+  +D ++ VP
Sbjct: 1344 EECNDQAPYGVIGIIQGSSLLRKTDVHSEIILDEIYSVP 1382


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 291 NGNTNPSSPDKGSRESQDSAACHLSGD-QHTRLPNAESAVLTTTVAI 154
           NG TNPSS    S  S  S++     +  +  L N ++   T+TV +
Sbjct: 50  NGTTNPSSNFNDSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,074
Number of Sequences: 5004
Number of extensions: 42121
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)