Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_D17
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 98 1e-21
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 78 1e-15
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 71 1e-13
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 62 6e-11
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 44 2e-05
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 38 0.001
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 35 0.011
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 33 0.033
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 31 0.18
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 31 0.18
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 29 0.71
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.2
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 1.6
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 2.2
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 27 2.9
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce... 27 2.9
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 3.8
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 26 3.8
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 3.8
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 26 5.0
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 8.8
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 8.8
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 97.9 bits (233), Expect = 1e-21
Identities = 49/118 (41%), Positives = 67/118 (56%)
Frame = +1
Query: 172 EQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKT 351
E+LK KGN A +++ AI +T+AI LD NH+LYSNRS L+DA K
Sbjct: 3 EELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKC 62
Query: 352 VSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDVXRAMKES 525
L P+W+KG+SRKG+ L L + A AY GL+ + N QL GL+ V A ++
Sbjct: 63 TELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQA 120
Score = 62.1 bits (144), Expect = 6e-11
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Frame = +1
Query: 163 DKVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDA 342
DK E+ + KGN+ + +F AIK YTE P++ + NR+ + D
Sbjct: 397 DKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDC 456
Query: 343 EKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDV------ 504
K + L+PN++K Y RK L L Y + I A ++ + LR++
Sbjct: 457 NKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQLSK 516
Query: 505 ----XRAMKESNLQXERLIXLYKNPRTREWMKDP 594
+ +++ + E + + K+P ++DP
Sbjct: 517 CMSAMASQRQNETEEETMARIQKDPEVLGILQDP 550
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 77.8 bits (183), Expect = 1e-15
Identities = 38/120 (31%), Positives = 67/120 (55%)
Frame = +1
Query: 163 DKVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDA 342
++ E+LK +GN+A+ +++ +A+ YT+AI +DPT+ V YSNR+ +EDA
Sbjct: 81 EEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDA 140
Query: 343 EKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDVXRAMKE 522
+SL+P+ ++ + R G L A AY+ GL +P N+ L +GL + + +
Sbjct: 141 LTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNEVLKRGLEAANKQLNQ 200
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 70.9 bits (166), Expect = 1e-13
Identities = 37/120 (30%), Positives = 61/120 (50%)
Frame = +1
Query: 175 QLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKTV 354
+LK + N L + +AI YT+AI LD TN +LYSNRS + DA K +
Sbjct: 7 ELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAI 66
Query: 355 SLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDVXRAMKESNLQ 534
+P ++K Y R+ + + + +EA+ +R L L P++ + LR+ + +K Q
Sbjct: 67 ECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKRIRFQ 126
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 62.1 bits (144), Expect = 6e-11
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = +1
Query: 166 KVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNH----VLYSNRSXXXXXXXXXXXXL 333
K+E K +GND N+ +A + Y+EA+ +DP N LY NR+ L
Sbjct: 222 KLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEAL 281
Query: 334 EDAEKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDVXRA 513
D++ ++++ ++ KG + L ++EEA+ ++ + L+ ++ L Q LR +
Sbjct: 282 SDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLE 341
Query: 514 MKES 525
+K+S
Sbjct: 342 LKKS 345
Score = 40.3 bits (90), Expect = 2e-04
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +1
Query: 148 QKTAMDKVEQLKKKGNDALXNQNFDEAIKCYTEAIAL--DPTNHVLYSNRSXXXXXXXXX 321
Q+ + E+ K GN + + EAIK YTEAI L D + YSNR+
Sbjct: 16 QQEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEF 75
Query: 322 XXXLEDAEKTVSLNPNWSKGYSRKGSVLXYLSRYEEA 432
L DA+++ + P+ K SR LS EA
Sbjct: 76 ELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEA 112
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 340 AEKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEP---TNQQLAQGLRDVXR 510
A + LNP + +G V+ Y +AI ++ L+L+P T + L + +R +
Sbjct: 166 AHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLEN 225
Query: 511 AMKESN 528
+ N
Sbjct: 226 TKNQGN 231
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = +1
Query: 166 KVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHV-LYSNRSXXXXXXXXXXXXLEDA 342
+V+ +K+K L + F++A+ T+ I +P + L+ R+ DA
Sbjct: 5 QVKAIKEKTQQYLSKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQYSQAELDA 64
Query: 343 EKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDVXRAMKE 522
++ + LN ++GY R G +L ++A Y GLR+ L L+ V + + E
Sbjct: 65 KRMIHLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRMVHKMDPLRPVLKKVSQRLNE 124
Query: 523 SNLQXERLIXLYK 561
L+ ++ L++
Sbjct: 125 RILRTRPVLDLFR 137
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Frame = +1
Query: 172 EQLKKKGNDALXNQNFDEAIKCYTEAIAL---DPTNHVL-YSNRSXXXXXXXXXXXXLED 339
+ ++ GN+ ++ + +A + YT+A+A D + YSNR+ L D
Sbjct: 65 QNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLND 124
Query: 340 AEKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTN 474
+ + + +K Y R L L RY+EA R + P +
Sbjct: 125 CAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIRLCSLVHPND 169
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 34.7 bits (76), Expect = 0.011
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Frame = +1
Query: 169 VEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHV----LYSNRSXXXXXXXXXXXXLE 336
VE+ + GN+ +F +AI+ +T +++ P H L SNRS L+
Sbjct: 412 VEEQQSTGNELFRKGDFSQAIEEFTNSLSQLPAKHTKRVPLLSNRSLCYQKVGDLKTCLQ 471
Query: 337 DAEKTV----------------SLNPNWSKGYSRKGSVLXYLSRYEEAIXAYR 447
D ++ V S+N + K RK VL L +Y+E++ ++
Sbjct: 472 DVDELVDIIGEEKGHGESIRDKSMNDYYVKNMVRKAQVLEQLEKYQESLNIWK 524
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 33.1 bits (72), Expect = 0.033
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +1
Query: 190 GNDALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKTVSLNPN 369
G + Q +++A + Y +A+ D N + + L+ + + LNP
Sbjct: 591 GRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNPY 650
Query: 370 WSKGYSRKGSVLXYL-SRYEEAIXAYRTGLRLEPTNQQLAQGLR 498
S+ + G++ ++ +A+ AY+ L+PTN + L+
Sbjct: 651 ISEVWYDLGTLYESCHNQISDALDAYQRAAELDPTNPHIKARLQ 694
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 30.7 bits (66), Expect = 0.18
Identities = 19/102 (18%), Positives = 41/102 (40%)
Frame = +1
Query: 223 EAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKTVSLNPNWSKGYSRKGSV 402
+A+ Y ++ DPT+ V+Y + ++ + N + ++ +
Sbjct: 89 DAMSYYNSKLSEDPTHTVIYKRKLALLRSMGQTKECIQGLINYLDTFYNDLEAWAELADI 148
Query: 403 LXYLSRYEEAIXAYRTGLRLEPTNQQLAQGLRDVXRAMKESN 528
+ +E AI Y + L+P +L L D+ + +SN
Sbjct: 149 YVSVEAFESAIFCYEEMVLLQPFEPRLFARLGDLYFVLAQSN 190
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 30.7 bits (66), Expect = 0.18
Identities = 19/87 (21%), Positives = 31/87 (35%)
Frame = +1
Query: 223 EAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKTVSLNPNWSKGYSRKGSV 402
+A+KC AI LDPT Y+ + K + +N + G V
Sbjct: 449 QALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGLGMV 508
Query: 403 LXYLSRYEEAIXAYRTGLRLEPTNQQL 483
R ++A ++ + P N L
Sbjct: 509 YLKTGRNDQADFHFQRAAEINPNNSVL 535
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 169 VEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNH 273
+EQL +GN A +N++EA+ Y +A+ + H
Sbjct: 32 IEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIH 66
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 427 PRTSTNMXKRSLYVNILYSSLGLMIRFSRRLREQPRNSQLWHELL 293
P + K L + L SSL ++ R+ LR P S L+H+LL
Sbjct: 403 PSQKLGLLKSLLSIGDLSSSLLILGRYPFLLRAYPELSNLYHKLL 447
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 211 QNFDEAIKCYTEAIALDPTNHVLY 282
++++ ++KCY A+A+ P N L+
Sbjct: 90 KDYNNSLKCYQNALAISPNNESLW 113
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/74 (17%), Positives = 31/74 (41%)
Frame = +1
Query: 211 QNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKTVSLNPNWSKGYSR 390
+ ++ + C+ +A+ +P+N +L++ + + VSL P + + S
Sbjct: 452 KEYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSN 511
Query: 391 KGSVLXYLSRYEEA 432
L +E+A
Sbjct: 512 MAVSNINLGYFEDA 525
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 373 SKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQL 483
SK + G ++ L YE + +R L+ EP+N+ L
Sbjct: 438 SKVQAGLGIIMYMLKEYERSADCFRQALQDEPSNEIL 474
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 160 MDKVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLYS 285
M ++ +K + AL ++ +KCY+ + + H LYS
Sbjct: 33 MHSLDTVKTRQQAALYTNKYNGMVKCYSTILCEEGVFHGLYS 74
>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 71 LKLIREYLKRVHAIIEDSFNT*IDYYRKQLWIRWNS*RRKVT 196
+K +E+++R ++ ++ + N ++YR+ I WN +VT
Sbjct: 5 VKYAQEFVQRYYSSLDTNRNGIAEFYRENSLILWNGKPMQVT 46
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -1
Query: 427 PRTSTNMXKRSLYVNILYSSL 365
PR +T+ K+SLY+N+LY SL
Sbjct: 442 PRLTTSS-KQSLYLNLLYKSL 461
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 3.8
Identities = 23/111 (20%), Positives = 40/111 (36%)
Frame = +1
Query: 163 DKVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDA 342
+ V ++K AL N + + AI + T +Y++ S + D
Sbjct: 5 ENVNLVEKSNYVALENTREIDVFDEFLNAIGNENTITPVYADSSLTHLRKKSYTKVVHDC 64
Query: 343 EKTVSLNPNWSKGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQLAQGL 495
+ +NP K R+G L A + L L+P N + + L
Sbjct: 65 TYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDPNNTYIQKSL 115
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 190 GNDALXNQNFDEAIKCYTEAIALDPTNHV 276
G L Q FD+A+K + AI L+ H+
Sbjct: 490 GEILLDQQKFDDAVKNFDHAIELEKREHL 518
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 145 LQKTAMDKVEQLKKKGNDALXNQNFDEAIKCYTEAIALDPTNHVLY 282
L T ++ K K + L + NFDE + ++ DP N VLY
Sbjct: 681 LNTTDVEFHSSKKIKDYEDLEDANFDEEWSKAADLMSDDPENQVLY 726
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/95 (20%), Positives = 36/95 (37%)
Frame = +1
Query: 196 DALXNQNFDEAIKCYTEAIALDPTNHVLYSNRSXXXXXXXXXXXXLEDAEKTVSLNPNWS 375
D + AI C +AI L+ N+V ++ +++ LN S
Sbjct: 905 DTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLLLNERSS 964
Query: 376 KGYSRKGSVLXYLSRYEEAIXAYRTGLRLEPTNQQ 480
++ G++ E A A+ + ++P N Q
Sbjct: 965 GVWANYGALCIQNHDVECANAAFTRSISIDPDNSQ 999
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 214 NFDEAIKCYTEAIALD 261
NFD A +CY EA+ +D
Sbjct: 215 NFDRAKECYKEALMVD 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,377
Number of Sequences: 5004
Number of extensions: 43106
Number of successful extensions: 128
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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