Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D13
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.097
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   8.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 0.097
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = -1

Query: 165 CMYXN*YNFYLFTVY-*FTVIIVNFVLSL-----VYRFFCLFV 55
           C+Y   Y F +FTV+  F + I  FV+ L     +Y F+C F+
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFI 154



 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 165 CMYXN*YNFYLFTVY*FTVIIVNFVLSLVYRFFCLFV 55
           C+Y   Y F LFTV+   ++ + +   +   F C F+
Sbjct: 237 CIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFI 273


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 138 YLFTVY*FTVIIVNFVL 88
           YLFTVY   +II   VL
Sbjct: 133 YLFTVYLLPIIINPLVL 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,535
Number of Sequences: 336
Number of extensions: 1462
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)