Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D13
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.60 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.60 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 365 RTXKANFTKKAYRSXRCQXNSXKIAEKWCYSSY*KSSNSATEHH 496
           R  +  F    Y S R    + +  EK CY  Y  S+   +E H
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEH 403


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 365 RTXKANFTKKAYRSXRCQXNSXKIAEKWCYSSY*KSSNSATEHH 496
           R  +  F    Y S R    + +  EK CY  Y  S+   +E H
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEH 403


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 488 LWLSWRTFNS 459
           LWL W +FNS
Sbjct: 220 LWLFWPSFNS 229


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 491 VLWLSWRTFNS 459
           VLW  W  FNS
Sbjct: 230 VLWWGWLAFNS 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,307
Number of Sequences: 438
Number of extensions: 1667
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)