Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D11
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   3.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   5.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   5.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.5  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   7.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.3  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   9.6  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.6  

>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 542 VSQVELYLVPAFVQPHGHSTDERLNPCCRLVV 447
           VSQV  ++VP  + P  H+  ER   CC+  +
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWVER---CCKKAI 378


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 298 VVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 197
           ++L F P I+ T +   L++I   C L  F+S++
Sbjct: 114 LILLFSPYIAITSMARLLTLITLFCSLVCFISEV 147


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 198  IWDKKVRNGHIKRITDNDIQSLVLE-IVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKN 374
            I +K + +G + +   N +Q++ +    G+NV+ + I+C    ++  G ++P +V   K+
Sbjct: 920  IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVS-GKS 978

Query: 375  LKKYFTFE 398
            L  +  +E
Sbjct: 979  LPSFVPYE 986


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 378 LNFLLS*PKKVTLFQGSSLDPPGMLC 301
           LN LLS PK   L Q S+LD    +C
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVC 145


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
 Frame = +3

Query: 24  PLPNRELFVYLIKHKLLIIV*M*E*TLATKRTKTKMFKNTFQSGFLSIL-YSIGSKPLQI 200
           P+PNR+L +YL+   LL +  M     +            FQ G LS   + + SK  QI
Sbjct: 175 PIPNRQLLLYLL--DLLSVFAM---NSSKNLMTADNLAAIFQPGILSHPDHEVYSKDYQI 229

Query: 201 WDKKV------RNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADP 323
               +      +   IK I  + +  LV      N S+T IT  A P
Sbjct: 230 SQTALLFLINHQGSFIKTIPLSSLPPLVAAPTSPNTSSTLITQSAAP 276


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 207 CPKFAKVCCLCCKESIGNQ 151
           CP F K  CLC K  + NQ
Sbjct: 671 CPYFVKKRCLCGKHILENQ 689


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 240 LSSLCAHCELFCPKFAKVCCLCCKESIGNQTEKY 139
           L S C HC +  PK  KV  L  K  I N+   Y
Sbjct: 118 LYSSCMHCSIMSPKLQKV-MLAQKSLILNKVFDY 150


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 176 HRQQTFANLGQKSSQWAHKEDNR*RYTK 259
           H + TF  L Q+  +W     NR RY++
Sbjct: 455 HAKSTFKQLDQELYEWEKNLPNRLRYSR 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,509
Number of Sequences: 5004
Number of extensions: 51392
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)