Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D11
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052...   286   9e-78
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    30   1.9  
01_01_0614 + 4574914-4575023,4575044-4575155                           29   3.3  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    28   5.7  

>09_04_0692 +
           19502878-19502920,19505011-19505104,19505196-19505227,
           19505833-19506074,19506758-19506994,19508283-19508396
          Length = 253

 Score =  286 bits (702), Expect = 9e-78
 Identities = 128/160 (80%), Positives = 146/160 (91%)
 Frame = +3

Query: 126 KMFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYI 305
           KMFKNTFQSGFLSILYS+G+KPLQIWDK+V +GHIKR  D DIQS VLEI+GTNV +TYI
Sbjct: 28  KMFKNTFQSGFLSILYSLGTKPLQIWDKEVVDGHIKRPQDEDIQSNVLEIIGTNVQSTYI 87

Query: 306 TCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRXFRASNYQSTTRVKPFIC 485
           TCPADP  TLGIKLPFL +I+KNLKKYFTFE+QVLDDKNVRR FRASN+QS TRVKP+IC
Sbjct: 88  TCPADPAATLGIKLPFLALIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQSVTRVKPYIC 147

Query: 486 TMPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHAN 605
           TMP++L++GWN IQ NL+D T+RAYGTNYVETLRVQ+HAN
Sbjct: 148 TMPLKLEDGWNNIQLNLSDLTKRAYGTNYVETLRVQVHAN 187


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 159 LSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLG 338
           L +  ++  K   I+D       +K+I   D+  L++++ G+    TYI C +   KT G
Sbjct: 61  LELKVAVLRKLAAIYDNCAVYKKLKKILKKDLSDLIVQLNGSEWMETYIVCYSRCVKTAG 120


>01_01_0614 + 4574914-4575023,4575044-4575155
          Length = 73

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 322 GSAGHVMYVVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 197
           GS    +Y   T+ PT + TR  IS SVI    PLR + S I
Sbjct: 3   GSTTTTIYAT-TYKPTYAKTRRRISTSVIGMAIPLRRYKSAI 43


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 254  TKPGARNRGNERQYHVHNMPGG--SKEDPWNKVTFFGYD 364
            TK  +RN  ++   + +N PGG  S  D W+ V+ F +D
Sbjct: 1394 TKLSSRNVADKGPVNAYNFPGGFDSFLDQWSTVSEFSFD 1432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,974
Number of Sequences: 37544
Number of extensions: 298256
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)