Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D11
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)                      171   4e-43
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   30   1.4  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 29   4.4  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    29   4.4  
SB_13242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 195

 Score =  171 bits (416), Expect = 4e-43
 Identities = 77/82 (93%), Positives = 81/82 (98%)
 Frame = +3

Query: 360 MIIKNLKKYFTFEVQVLDDKNVRRXFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLA 539
           MIIKNLKKYFTFEVQVLDDKNV+R FRASNYQSTTRVKPFICTMPMRLD+GWNQIQFNL+
Sbjct: 1   MIIKNLKKYFTFEVQVLDDKNVKRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLS 60

Query: 540 DFTRRAYGTNYVETLRVQIHAN 605
           DFTRRAYGTNY+ETLRVQIHAN
Sbjct: 61  DFTRRAYGTNYIETLRVQIHAN 82



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 607 CXITXVYFSDRLYSXD 654
           C I  VYFSDRLYS D
Sbjct: 83  CRIRRVYFSDRLYSED 98


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 578  LNIVSAVSSSCEVSQVELYLVPAFVQ-PHGHSTDERLNPCCRLVVAGSKXSTYVFVI--K 408
            + +  A SSSCE++ + L   P  V    G+   +    C   +++G K S Y ++   K
Sbjct: 1026 IKMFDAHSSSCELNPLPLMYTPVAVSYRSGYQEPKSRESCLHHLLSGQKHSGYYWITPSK 1085

Query: 407  HLNFKSEILF 378
            H + KS +++
Sbjct: 1086 HHSRKSMLVY 1095


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 240 LSSLCAHCELFCPKFAKVCCLC 175
           +   C HCEL  P F+K C LC
Sbjct: 223 VEEFCYHCELVAPIFSKHCRLC 244


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 516 NQIQFNLADFTRRAYGTNYVETLRVQIHANLXNNXSLF 629
           N +   +  F  + YGT+Y++TL   + +NL  N + F
Sbjct: 171 NSLASKVMSFCFKVYGTSYLQTLLEPLVSNLVKNTTSF 208


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/93 (24%), Positives = 39/93 (41%)
 Frame = +3

Query: 231 KRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVL 410
           +++ +   + +V E V  N +T  I    D KK   IK+     I K +  +      V 
Sbjct: 6   RKVAEKGRRDIVNEHVHAN-NTRAIFRKLDYKKETSIKIYSATNITKRMPLFVDITADVK 64

Query: 411 DDKNVRRXFRASNYQSTTRVKPFICTMPMRLDE 509
            +K+  R    SN      +K  IC  P+R ++
Sbjct: 65  GEKSKARVPVVSNAHLYYPIKYAICVPPLRSEK 97


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 158 PIDSLQHRQQTFANLGQKSSQWAHKEDNR*RYTKPGARNRGNERQYHVHNMPGGSKE 328
           P+D+ Q R     N GQ+  Q   +++N  +Y +   + + + +Q   +  PGG ++
Sbjct: 500 PVDAGQPRPTQAPNSGQQQQQQQQQQENNQQYNQGNQQQQQDSQQ---NRQPGGQQQ 553


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 117 TKTKMFKNTFQSGFLSI-LYSIGSKPLQIWDKKVRNGHIKRITDNDIQSL 263
           TK K+F N     F+     +  +K  Q W KK +NG +  +T N I++L
Sbjct: 155 TKRKLFSNKRSMLFVQDGAPAHTAKASQDWCKKNQNGRLTHLTSNPIENL 204


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 243 DNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNL-KKYFTFEVQVLDDK 419
           D   +  V  I+G+  +  YI  P    +TLG+   ++  + K +  KYF   + V  + 
Sbjct: 1   DKQTKGTVYRIIGSIPAGNYIQFPCTSSQTLGLTGRYIYFMFKPIPTKYFVVHLDVATED 60

Query: 420 NVRRXFRASN 449
            +      SN
Sbjct: 61  GLAVRVSFSN 70


>SB_13242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 494 GHSTDERLNPCCRLVVAGSKXSTYVFVIKHLNF-KSEILF*IFYYHNQKR*LYSK 333
           GHS  E ++   R +  GSK   Y+ ++  +   K   +F +FY       LY +
Sbjct: 89  GHSETELVDAVIRAIAPGSKLKGYLEIVSDVTLPKLRQIFRVFYQEKTGTELYQE 143


>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 243 DNDIQSLVLEIVG-TNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDK 419
           + D++  + E+    N  TT     + P KT+G   P     + + +   T    +    
Sbjct: 27  EEDVRQTLFELERYLNTGTTQNDVASQPAKTIGSVAP-----LDSARAVTTSSDCLYSMS 81

Query: 420 NVRRXFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRA 557
           N  +    ++ +   R +P   ++P+R D+   Q    L DF++R+
Sbjct: 82  NAAQKSFPTSSEQYFRYQPNDASLPVRFDQPCGQFTEALKDFSKRS 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,744,917
Number of Sequences: 59808
Number of extensions: 370063
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)