Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D09
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8156| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.82 
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                30   1.9  
SB_2219| Best HMM Match : 7tm_2 (HMM E-Value=0.81)                     29   2.5  

>SB_8156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 170 ASNATLIGASITYVGALFLLLSFAGPYWMESYPEMFSPFK 289
           AS++ LIGA  T V  +    S  G +++ +Y  +F PFK
Sbjct: 187 ASSSCLIGARFTLVALICKRSSIRGSWYLYTYLSIFVPFK 226


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 336 PGNLKLSKQYSHNPICLNGENISGYDSIQ*GPANER 229
           P + ++ KQ+ H P+C+N  NI+    +Q  P + R
Sbjct: 21  PTSTRVCKQHQHQPVCVNSTNIN--PCVQTAPTSTR 54



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 336 PGNLKLSKQYSHNPICLNGENISGYDSIQ*GPANER 229
           P + ++ KQ+ H P+C N  NI+    +Q  P + R
Sbjct: 50  PTSTRVCKQHQHQPVCANSTNIN--PCVQTAPTSTR 83



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 336 PGNLKLSKQYSHNPICLNGENISGYDSIQ*GPANER 229
           P + ++ KQ+ H P+C N  NI+    +Q  P + R
Sbjct: 79  PTSTRVCKQHQHQPVCANSTNIN--PCVQTAPTSTR 112


>SB_2219| Best HMM Match : 7tm_2 (HMM E-Value=0.81)
          Length = 148

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 407 WLLPGWLMAVQFFVTVALMLSFAAQVLLACVIVRWPLXTVLRYEWIFVFYSFIMVAVSSA 586
           W+L   L  +Q ++ +  + + A   L  C I  W L  V+     +++Y      V  A
Sbjct: 20  WML---LEGIQLYLQLVRVYN-ADMNLKLCYIFAWALVIVVSIYMGYLWYRVTWTVVVPA 75

Query: 587 FLFLAVAIFXGNC-YRRDW 640
            L + V+I+ G+  YR  W
Sbjct: 76  ALVIVVSIYMGHLWYRVTW 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,328
Number of Sequences: 59808
Number of extensions: 454816
Number of successful extensions: 994
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)