Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D09
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126139-1|AAI26140.1|  215|Homo sapiens lens intrinsic membrane...    38   0.041
BC074917-1|AAH74917.1|  215|Homo sapiens lens intrinsic membrane...    38   0.041
BC074916-1|AAH74916.1|  215|Homo sapiens lens intrinsic membrane...    38   0.041
BC069430-1|AAH69430.1|  215|Homo sapiens lens intrinsic membrane...    38   0.041
AF340020-1|AAK26328.1|  173|Homo sapiens MP19 protein.                 38   0.041
AF340019-1|AAK26327.1|  215|Homo sapiens MP19ins protein.              38   0.041
AF305941-1|AAG32328.1|  173|Homo sapiens LIM2 protein.                 38   0.041
CR542116-1|CAG46913.1|  185|Homo sapiens RABAC1 protein.               30   8.3  
CR457214-1|CAG33495.1|  185|Homo sapiens RABAC1 protein.               30   8.3  
BT019964-1|AAV38767.1|  185|Homo sapiens Rab acceptor 1 (prenyla...    30   8.3  
BC008950-1|AAH08950.1|  185|Homo sapiens RABAC1 protein protein.       30   8.3  
AJ133534-1|CAB43107.1|  185|Homo sapiens prenylated Rab acceptor...    30   8.3  
AF112996-1|AAP97229.1|  184|Homo sapiens prenylated RAB acceptor...    30   8.3  
AF112202-1|AAF17190.1|  185|Homo sapiens prenylated rab acceptor...    30   8.3  

>BC126139-1|AAI26140.1|  215|Homo sapiens lens intrinsic membrane
           protein 2, 19kDa protein.
          Length = 215

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>BC074917-1|AAH74917.1|  215|Homo sapiens lens intrinsic membrane
           protein 2, 19kDa protein.
          Length = 215

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>BC074916-1|AAH74916.1|  215|Homo sapiens lens intrinsic membrane
           protein 2, 19kDa protein.
          Length = 215

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>BC069430-1|AAH69430.1|  215|Homo sapiens lens intrinsic membrane
           protein 2, 19kDa protein.
          Length = 215

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>AF340020-1|AAK26328.1|  173|Homo sapiens MP19 protein.
          Length = 173

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>AF340019-1|AAK26327.1|  215|Homo sapiens MP19ins protein.
          Length = 215

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>AF305941-1|AAG32328.1|  173|Homo sapiens LIM2 protein.
          Length = 173

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 GASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDN 322
           G    +VG + L+++ A  +WM+    +   F H GLW YC  N
Sbjct: 8   GLFCAWVGTILLVVAMATDHWMQY--RLSGSFAHQGLWRYCLGN 49


>CR542116-1|CAG46913.1|  185|Homo sapiens RABAC1 protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 78  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>CR457214-1|CAG33495.1|  185|Homo sapiens RABAC1 protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 78  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>BT019964-1|AAV38767.1|  185|Homo sapiens Rab acceptor 1
           (prenylated) protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 78  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>BC008950-1|AAH08950.1|  185|Homo sapiens RABAC1 protein protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 78  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>AJ133534-1|CAB43107.1|  185|Homo sapiens prenylated Rab acceptor 1
           (PRA1) protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 78  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>AF112996-1|AAP97229.1|  184|Homo sapiens prenylated RAB acceptor 1
           protein.
          Length = 184

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 77  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 107


>AF112202-1|AAF17190.1|  185|Homo sapiens prenylated rab acceptor 1
           protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 539 WIFVFYSFIMVAV-SSAFLFLAVAIFXGNCY 628
           ++FVF   I+  V +S  L +A+A+F G CY
Sbjct: 78  YVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,757,873
Number of Sequences: 237096
Number of extensions: 2305041
Number of successful extensions: 7666
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7659
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)