Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D09
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    37   0.013
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   4.7  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    28   6.2  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 185  LIGASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGL-WEYCFDN--FRFP 334
            L G S T+ G   L + FAG Y ++ +P+ F+PF H G   E+ F    FRFP
Sbjct: 1513 LPGISPTHPG---LRIKFAGRYILDQFPDQFAPFLHFGCDLEHTFPGTLFRFP 1562


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 190 WSQYHLCGGFISPPFICWSLLDG---IISRNVLSIQTYGIVGVLL 315
           W +  +CG F    FI W + DG      + +L +   G++G LL
Sbjct: 289 WCKSGICGHFGGGGFIIWDVSDGQDDYYFKELLPMAVIGVIGGLL 333


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/66 (21%), Positives = 35/66 (53%)
 Frame = +2

Query: 416 PGWLMAVQFFVTVALMLSFAAQVLLACVIVRWPLXTVLRYEWIFVFYSFIMVAVSSAFLF 595
           P W+++  +F+T++++      +  + + +++    +  Y   FVFY F+ + +  A  F
Sbjct: 383 PYWMISYAYFLTISVLYVICLMIFGSAIGLKF--FRLNSYSIQFVFY-FLYLNLQIALAF 439

Query: 596 LAVAIF 613
           L  ++F
Sbjct: 440 LVSSVF 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,495
Number of Sequences: 28952
Number of extensions: 317704
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)