Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D08
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   5.4  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   9.5  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 391 SLNLFDGHFSTRKDYIHSLSLHY 459
           SLN F G FST+KD +H++   Y
Sbjct: 443 SLNNFSG-FSTKKDVLHAIEKVY 464


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 111 ILMSKADF*ASRGKSMLSSVAV*INKSTVARNFTQSYPD 227
           ++ SK D    RGK+ L      INK  + +    SYP+
Sbjct: 709 LVCSKYDVEIMRGKANLEVRPSSINKGGIVKQILSSYPE 747


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 NITITTWSLNLFDGHFSTRKDYIHSLSLHYY 462
           N+T  TW  NL + H    +D+   L  +Y+
Sbjct: 183 NLTPITWDKNLVENHKLADRDFAVGLLKNYW 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,958
Number of Sequences: 5004
Number of extensions: 42808
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)