BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P04_F_D08 (650 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 5.4 SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 9.5 SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 25 9.5 >SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 744 Score = 25.8 bits (54), Expect = 5.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 391 SLNLFDGHFSTRKDYIHSLSLHY 459 SLN F G FST+KD +H++ Y Sbjct: 443 SLNNFSG-FSTKKDVLHAIEKVY 464 >SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 817 Score = 25.0 bits (52), Expect = 9.5 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 111 ILMSKADF*ASRGKSMLSSVAV*INKSTVARNFTQSYPD 227 ++ SK D RGK+ L INK + + SYP+ Sbjct: 709 LVCSKYDVEIMRGKANLEVRPSSINKGGIVKQILSSYPE 747 >SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr 3|||Manual Length = 587 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +1 Query: 370 NITITTWSLNLFDGHFSTRKDYIHSLSLHYY 462 N+T TW NL + H +D+ L +Y+ Sbjct: 183 NLTPITWDKNLVENHKLADRDFAVGLLKNYW 213 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,349,958 Number of Sequences: 5004 Number of extensions: 42808 Number of successful extensions: 94 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 94 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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