Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D08
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        28   5.7  

>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 325 AKITLNADSGPSRWSNITITTWSLNLFDGHFSTRKDYIHSLSLHYY 462
           A+I LNA    +  S+I+++  SL +FD    T K++ ++  +H Y
Sbjct: 582 AQILLNALQNKNELSSISLSDLSLLIFDECHHTNKNHSYNKIMHQY 627


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -1

Query: 212 CKVAGDGRFIDLDRN***HRFSSRSSEICL*HKNTKATTFETALKRAFVANYNEPCSNAT 33
           C + G   F+D   N   HRFSSR+       KNT  T  +   +   V      CSN  
Sbjct: 152 CNLDGHEEFLDFVTNTHHHRFSSRALTRPFCFKNTTGTKPKFFCRPLNVPETKHICSNRV 211

Query: 32  TR 27
            R
Sbjct: 212 HR 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,110,183
Number of Sequences: 59808
Number of extensions: 338553
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)