Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D04
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.77 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.3  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   5.4  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 401 KVIFLY*SSFATLYFLFFTSYIICLF 324
           ++  +Y SSF  L+FLFF    +C+F
Sbjct: 141 QIFIVYFSSFPILHFLFFFFLCVCVF 166


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 62   IKFLLEIFFLNYACQLRSYISSIRIKSVQFPKIF*TELIC 181
            I  LL IFF+     L S I  + + +V FP IF   LIC
Sbjct: 2180 IIILLLIFFIVVWAVLLSVIKILSLNNVWFPVIFGLGLIC 2219


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 217 FMRK--ILVIPNYSAY*LSLEYFWKLYTFNANRRYVGT*LAGIV 92
           F+RK  I V P YS+   S  YFWK   F A   Y+   L  IV
Sbjct: 431 FVRKGLIRVAPLYSSSSSSPYYFWKGINFRAFASYICGMLINIV 474


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 459 FSH*NCIISKXSNSTGECFKGDIFILIIFCNTLFFIFY 346
           +SH N  ++  +N    CF   +  +I+F NT+  IFY
Sbjct: 8   YSHKNFNVTN-NNFQVSCFNPILLKIILFLNTIVCIFY 44


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 379 HLLQHFIFYFLPVTLSVFFGKIKLCINFVNSSQNIGK 269
           H + HF  YF+ + + VF       + F+ + + I +
Sbjct: 137 HTVDHFCLYFIYIAIGVFGCSYIYTVTFIIAGERIAR 173


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 494 EGIFFPYLINGSLWGYSRYATVGELTGLNLRELANTSPSKSSCFVIST 637
           +G+ F YLI G +   + ++ V  L    L E      SK  CF  +T
Sbjct: 54  QGLSFSYLILGYIGVLNAFSNVIALQISPLTECCQNYYSKKQCFANTT 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,830
Number of Sequences: 5004
Number of extensions: 40482
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)