Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D04
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857...    31   1.1  
05_07_0171 - 28131533-28131654,28131815-28131908,28132006-281320...    30   1.4  
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233...    30   1.4  

>09_04_0244 -
           15984862-15984978,15985054-15985119,15985701-15985793,
           15987284-15987410,15988710-15988840,15989485-15989766,
           15989852-15989985,15990083-15990292,15990456-15990486
          Length = 396

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -1

Query: 134 CE*TICRNVVGRHSLKKKFQVKTLLLCHQSLXKIRSQLDCQEL 6
           C   +CR V+   ++ + F+ KTLL+    + + RS+LDC EL
Sbjct: 171 CYSMLCRPVI---AVARNFKSKTLLVRCGEMTRERSELDCDEL 210


>05_07_0171 -
           28131533-28131654,28131815-28131908,28132006-28132086,
           28132199-28132247,28132333-28132418,28132660-28132887,
           28132969-28133007,28133281-28133343,28133643-28133712,
           28133802-28133848,28133925-28133987,28134075-28134125,
           28134421-28134485,28134573-28134629,28134779-28134896,
           28135494-28135580,28135672-28135751,28136364-28136481
          Length = 505

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 113 NVVGRHSLKKKFQVKTLLLCHQSLXKIRSQLDCQELW 3
           NVVG   L+K  + K  L CH  +  I +  D   +W
Sbjct: 170 NVVGEQELEKNVKEKLSLFCHVPVANIFTLYDVSNIW 206


>01_07_0255 -
           42322111-42322308,42322658-42322750,42323127-42323344,
           42323476-42323642,42324097-42324207,42324267-42324409,
           42324492-42324710,42324975-42325055,42325202-42325381,
           42325971-42326301,42326775-42326888,42327036-42327127,
           42327631-42328059
          Length = 791

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 491 FEGIFFPYLINGSLWGYSRYATVGELTGLNLRELANTSP 607
           FEG+FF   ING+  GY   A  G ++G+N    ++  P
Sbjct: 461 FEGLFFSGQINGTT-GYEEAAAQGIISGINAARHSDGKP 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,711
Number of Sequences: 37544
Number of extensions: 198551
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)