Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C23
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    28   1.8  
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741     28   2.4  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    26   7.4  

>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 181 RIIKLRSGGITVITKRCQGGWVLHPSRPKHE 89
           ++I    GG+   +KR Q  WV+     KHE
Sbjct: 112 KVIPASPGGVATESKRAQASWVVLDKELKHE 142


>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
          Length = 375

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  PHVWDAKDARPSRLDNA 138
           PH+W A D+ P  +DNA
Sbjct: 147 PHIWSAIDSMPCSMDNA 163


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 188 LLKNHKITKRRDHSHYQA 135
           LL+N ++T+RR+H H Q+
Sbjct: 385 LLRNQRLTQRRNHRHGQS 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,509,920
Number of Sequences: 37544
Number of extensions: 134222
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)