Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C23
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 145 ITKRCQGGWVLHP 107
           I ++  G WV+HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 145 ITKRCQGGWVLHP 107
           I ++  G WV+HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 145 ITKRCQGGWVLHP 107
           I ++  G WV+HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 134 TLGNDCDPSAS*FYD 178
           TL  DCD   S F+D
Sbjct: 127 TLSYDCDVDVSTFFD 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,178
Number of Sequences: 438
Number of extensions: 1378
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)