Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C23
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03180.1 68415.m00271 hypothetical protein                          28   1.6  
At2g44930.1 68415.m05593 expressed protein contains Pfam profile...    26   6.3  
At1g64180.1 68414.m07270 intracellular protein transport protein...    26   8.3  
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ...    26   8.3  

>At2g03180.1 68415.m00271 hypothetical protein
          Length = 120

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 226 VQAFYKTLHGDSCF*RIIKLRSGGITVITKRCQGGWVL 113
           +QAF KT HG SC  RI ++    +T    RC    V+
Sbjct: 44  IQAFKKTFHGRSC--RIREIVEDSVTTSPWRCSQNAVI 79


>At2g44930.1 68415.m05593 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 515

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 204 SMVTVAFEES*NYEAEGSQSLPSVVKAAGSCILRVPNMRVRLCVNP 67
           S+ T  ++    YE+E S   PS       CI RVPN R+R  VNP
Sbjct: 55  SVTTKPYKPDSCYESEISGIWPSSFSKEYCCIYRVPN-RLRR-VNP 98


>At1g64180.1 68414.m07270 intracellular protein transport protein
           USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
           americana]; contains weak similarity to
           Swiss-Prot:P25386 intracellular protein transport
           protein USO1 [Saccharomyces cerevisiae]
          Length = 593

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 194 QLLLKNHKITKRRDHS 147
           Q+L+K+H +T+R DH+
Sbjct: 142 QMLMKHHHLTERNDHA 157


>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
           identical to WIP3 protein [Arabidopsis thaliana]
           gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 337

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -2

Query: 298 YICSYKCKEKIRIKVKSFIXXFXIVQAFYKTLHGDSCF 185
           Y C+  CK  I       +  F  +Q  YK  HG   F
Sbjct: 228 YCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPF 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,163,803
Number of Sequences: 28952
Number of extensions: 107915
Number of successful extensions: 234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)