Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C21
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52924| Best HMM Match : Proteasome (HMM E-Value=0.29) 83 2e-16
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 56 3e-08
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 48 4e-06
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 31 0.69
SB_15625| Best HMM Match : E1_dh (HMM E-Value=0) 29 2.1
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 28 4.8
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.4
SB_28404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_52924| Best HMM Match : Proteasome (HMM E-Value=0.29)
Length = 116
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 301 VIGDSGDTNQF-AEYIAKNIXLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLM 477
+IG GD A A + +M++GY+L P AAA+FTRR LAEYLRS TPY VN+L+
Sbjct: 4 LIGIQGDGFVLVAADCASGRSIVRMKDGYDLTPHAAANFTRRTLAEYLRSRTPYMVNLLL 63
Query: 478 GGYDKENGPELYFMDYLXSSVKV 546
G+ GP LY MDYL + KV
Sbjct: 64 AGHSSNEGPALYHMDYLAALSKV 86
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +1
Query: 166 LQCLLGIQCNDFVMIAADQSNSHSIMIMKD 255
++ L+GIQ + FV++AAD ++ SI+ MKD
Sbjct: 1 MEFLIGIQGDGFVLVAADCASGRSIVRMKD 30
>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
Length = 291
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/130 (26%), Positives = 59/130 (45%)
Frame = +1
Query: 175 LLGIQCNDFVMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKN 354
+L I DF +IA+D S I D K+YK++ V+G G GD ++I+
Sbjct: 90 VLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISAR 149
Query: 355 IXLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLXS 534
+ +Y+ +G + +A A L Y R PY+ ++ G D E ++ D + S
Sbjct: 150 LQMYEHDHGKAMSCTAIAQMLSTML--YYRRFFPYYTYNILAGLDSEGKGCVFSFDPVGS 207
Query: 535 SVKVPFAAHG 564
+ + A G
Sbjct: 208 YEREVYRAGG 217
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +1
Query: 202 VMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIXLYKMRNG 381
V IAAD+ + D KI+++ ++L +G+ G + D + + + LY++R G
Sbjct: 90 VAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSRLKFRLNLYELREG 149
Query: 382 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYD-KENGPELYFMDYL 528
+ P S L Y R PYFV ++ G D K N P + MD +
Sbjct: 150 RPIKPKTFLSMVSNLL--YERRFGPYFVEPVIAGLDPKTNEPFISSMDLI 197
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 175 LLGIQCNDFVMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGD 321
+LGI+ N V++AAD S+ + + ++ ++++ ++G GD D
Sbjct: 878 VLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926
>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
Length = 352
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 501 SIFFIITTHEHIYKVGSTAPKILCEITTCETGCS*G 394
S+ H Y G +A ++LCE+T +TGC+ G
Sbjct: 74 SVITAYRCHGWTYMRGRSAREVLCELTGRKTGCTQG 109
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 357 SLSKVAEQDYLGVRCSSNLRWGPHASKISEK--ANKVLGLLRRTLKPCSQLV 406
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 307 SLSKVAEQDYLGVRCSSNLRWGPHASKISDK--ANKVLGLLRRTLKPCSQLV 356
>SB_28404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 195 SLSKVAEQDYLGVRCSSNLRWGPHASKISDK--ANKVLGLLRRTLKPCSQLV 244
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 151 SLSKVAEQDYLGVRCSSNLRWGPHASKISDK--ANKVLGLLRRTLKPCSQLV 200
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 102 SLSKVAEQDYLGVRCSSNLRWGPHASKISDK--ANKVLGLLRRTLKPCSQLV 151
>SB_10258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 71 SLSKVAEQDYLGVRCSSNLRWGPHASKISDK--ANKVLGLLRRTLKPCSQLV 120
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 329 NLLNILQKIFXCIKCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCSWVV 484
+L + ++ + ++C + WGP +S + +LG + TL CS +V
Sbjct: 341 SLSKVAEQDYLGVRCSSNLRWGPHASKISDK--ANKVLGLLRRTLKPCSQLV 390
>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 583 NLDIHHNHELQMVPSRLMXNSP*NTVQVHFLYHNHP 476
N+ I H H+ PS + S N + +H YH+HP
Sbjct: 465 NIIIIH-HQYHHYPSSISSLSIINIIIIHHQYHHHP 499
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,066
Number of Sequences: 59808
Number of extensions: 304608
Number of successful extensions: 494
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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