Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C21
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 104 5e-23
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 48 4e-06
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 47 8e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 47 8e-06
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 46 3e-05
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 32 0.26
U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical pr... 27 7.4
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 27 7.4
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 104 bits (249), Expect = 5e-23
Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
Frame = +1
Query: 175 LLGIQCNDFVMIAADQSNSHSIMIMKDDEX-KIYKISDRLVMGVIGDSGDTNQFAEYIAK 351
L+GI ++V++AAD++ I+ D E K Y++ +L M IG+ GD QF ++ +
Sbjct: 7 LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66
Query: 352 NIXLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGY-DKENGPELYFMDYL 528
N+ LY +RNGYE+ PS A F RR++AE LRS Y V+VL+GGY DKE+ L +DYL
Sbjct: 67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126
Query: 529 XSSV-KVPFAAHGYGG 573
+ + + P+ G+ G
Sbjct: 127 ANGLGQQPYLFRGFCG 142
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/107 (28%), Positives = 50/107 (46%)
Frame = +1
Query: 202 VMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIXLYKMRNG 381
+++A D S I KI I DR+V + G + D + +AK LY++R
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 382 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMD 522
+ SAA+ + L Y V ++ GYDK+ GP+++ +D
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLS--VGSMVAGYDKK-GPQIFKVD 186
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 47.2 bits (107), Expect = 8e-06
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Frame = +1
Query: 184 IQCNDFVMIAAD-QSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIX 360
I +F ++A+D + + I I+ D KI ++D +++ G GD Q + + +
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 361 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLXSSV 540
Y+ ++ A RNL Y R PY+ ++ G D+ ++ D +
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174
Query: 541 KVPFAAHG 564
++ ++A G
Sbjct: 175 RLGYSASG 182
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 47.2 bits (107), Expect = 8e-06
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Frame = +1
Query: 184 IQCNDFVMIAAD-QSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIX 360
I +F ++A+D + + I I+ D KI ++D +++ G GD Q + + +
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 361 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLXSSV 540
Y+ ++ A RNL Y R PY+ ++ G D+ ++ D +
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174
Query: 541 KVPFAAHG 564
++ ++A G
Sbjct: 175 RLGYSASG 182
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +1
Query: 178 LGIQCNDFVMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 357
LGI ++ +++AA++ N H ++ K+Y++SD + V G + D N ++
Sbjct: 35 LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWA 94
Query: 358 XLYKMRNGYELGPSAAASFTRRNLAEY--LRSSTPYFVNVLMGGYDKENGPELYFMD 522
Y+ G E+ Y + P+ V++L G+DK G +LY D
Sbjct: 95 ASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSD 151
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 44.8 bits (101), Expect = 5e-05
Identities = 32/125 (25%), Positives = 60/125 (48%)
Frame = +1
Query: 202 VMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIXLYKMRNG 381
VM A ++ + +I+ K E K++K+++ + G + D +Q + ++ N+ L ++ G
Sbjct: 59 VMGADSRATAGNIIADKHCE-KVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTG 117
Query: 382 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLXSSVKVPFAAH 561
+ A +++L Y Y +L+GG D GP LY +++ PF A
Sbjct: 118 RKARVITALRQAKQHLFNYQGYIGAY---LLIGGVDP-TGPHLYMCSANGTTMAFPFTAQ 173
Query: 562 GYGGY 576
G G Y
Sbjct: 174 GSGSY 178
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 37.9 bits (84), Expect = 0.005
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +1
Query: 163 NLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSGDTNQFAEY 342
N Q +G++ D V++A + S ++ DD+ K+ +IS + G D +
Sbjct: 30 NGQPSVGLRAKDGVVLATENVGS----VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKK 85
Query: 343 IAKNIXLYKMRNGYELGPSAAASFTRRNLAEYLRSS--TPYFVNVLMGGYDKENGPELYF 516
K Y+M G E+ + + EY +S P+ ++L+ G+DK G L F
Sbjct: 86 ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 32.3 bits (70), Expect = 0.26
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Frame = +1
Query: 139 YDCKMSNINLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEXKIYKISDRLVMGVIGDSG 318
Y K N + ++ D +IA + S+ I+ D +Y+IS + IG
Sbjct: 27 YAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL-IVADTVTSVYQISQSVGCCAIGMIP 85
Query: 319 DTNQFAEYIAKNIXLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYF---VNVLMGGYD 489
D + +K +NGY++ P + +L +Y + +L YD
Sbjct: 86 DAKFQIKRAQGEAASWKYKNGYDM-PCELLAKKMADLNQYYTQNAEMRSLGCALLFISYD 144
Query: 490 KENGPELYFMD 522
E GPE+Y +D
Sbjct: 145 DEKGPEVYRVD 155
>U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical
protein D1005.2 protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 574 IHHNHELQMVPSRLMXNSP*NTVQVHFLYHNHP 476
+HHNHEL P + S N+V+V L HP
Sbjct: 377 VHHNHELGAPPVISLDPSIYNSVEVVDLKFPHP 409
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 565 NHELQMVPSRLMXNSP*NTVQVHFLYHN-HP*AHL 464
NH LQM P M P N Q +FL+H+ H HL
Sbjct: 620 NHPLQMTPIPPMSCPPSNYGQSNFLFHHQHLNQHL 654
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,340
Number of Sequences: 27780
Number of extensions: 233222
Number of successful extensions: 508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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