Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C20
(651 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62487 Cluster: DNA-directed RNA polymerase II subunit ... 150 2e-35
UniRef50_O14459 Cluster: DNA-directed RNA polymerase II subunit ... 108 1e-22
UniRef50_A2Y4G4 Cluster: Putative uncharacterized protein; n=6; ... 103 5e-21
UniRef50_P38421 Cluster: DNA-directed RNA polymerase II subunit ... 101 1e-20
UniRef50_Q54P04 Cluster: RNA polymerase II core subunit; n=1; Di... 98 1e-19
UniRef50_Q4P3H9 Cluster: Putative uncharacterized protein; n=1; ... 98 1e-19
UniRef50_Q7RCA7 Cluster: RNA polymerase II subunit 7; n=8; Acono... 83 6e-15
UniRef50_Q0CNG9 Cluster: DNA-directed RNA polymerase II 19 kDa p... 82 1e-14
UniRef50_P34087 Cluster: DNA-directed RNA polymerase II subunit ... 80 5e-14
UniRef50_Q8SRG5 Cluster: DNA-DIRECTED RNA POLYMERASE II 19kDa SU... 74 3e-12
UniRef50_Q7SH68 Cluster: Putative uncharacterized protein NCU026... 59 1e-07
UniRef50_A3FQ92 Cluster: DNA-directed RNA polymerase II, putativ... 57 3e-07
UniRef50_Q98S95 Cluster: RNA polymerase II RPB7 subunit-like pro... 54 2e-06
UniRef50_Q8LE42 Cluster: RNA polymerase II fifth largest subunit... 51 3e-05
UniRef50_A6QRA1 Cluster: At4g14660; n=5; Magnoliophyta|Rep: At4g... 50 6e-05
UniRef50_Q57840 Cluster: DNA-directed RNA polymerase subunit E';... 48 3e-04
UniRef50_A7I4V6 Cluster: DNA-directed RNA polymerase; n=1; Candi... 47 3e-04
UniRef50_Q4D3Y0 Cluster: RNA polymerase-like protein, putative; ... 43 0.006
UniRef50_Q8PZ98 Cluster: DNA-directed RNA polymerase subunit E';... 43 0.006
UniRef50_Q8TVE1 Cluster: DNA-directed RNA polymerase subunit E';... 42 0.013
UniRef50_Q8ZSV9 Cluster: DNA-directed RNA polymerase subunit E';... 41 0.030
UniRef50_A2F013 Cluster: RNA polymerase Rpb7, N-terminal domain ... 40 0.039
UniRef50_Q2FTM9 Cluster: DNA-directed RNA polymerase; n=1; Metha... 40 0.039
UniRef50_A1RX94 Cluster: DNA-directed RNA polymerase; n=1; Therm... 38 0.16
UniRef50_Q4Q5F4 Cluster: RNA polymerase-like protein, putative; ... 38 0.21
UniRef50_A5UJM4 Cluster: DNA-dependent RNA polymerase, subunit E... 38 0.28
UniRef50_UPI00015BAC65 Cluster: DNA-directed RNA polymerase, sub... 36 0.64
UniRef50_Q017Z0 Cluster: KIAA1665 protein; n=2; Ostreococcus|Rep... 36 0.84
UniRef50_Q55FA4 Cluster: RNA polymerase I subunit; n=1; Dictyost... 36 1.1
UniRef50_Q74MC3 Cluster: NEQ370; n=1; Nanoarchaeum equitans|Rep:... 36 1.1
UniRef50_Q9YFJ0 Cluster: DNA-directed RNA polymerase subunit E; ... 35 1.5
UniRef50_Q0DJV3 Cluster: Os05g0224700 protein; n=2; Oryza sativa... 35 1.9
UniRef50_A2EZH9 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_A5B6S0 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_Q7RK19 Cluster: Putative uncharacterized protein PY0308... 34 2.6
UniRef50_Q557J3 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_A6QZA4 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q23EW2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A1C3X4 Cluster: DNA-directed rna polymerase III 25 kD p... 34 3.4
UniRef50_UPI000049988A Cluster: DNA-directed RNA polymerase II s... 33 4.5
UniRef50_A0DXK9 Cluster: Chromosome undetermined scaffold_69, wh... 33 4.5
UniRef50_Q7QGV1 Cluster: ENSANGP00000012567; n=2; Anopheles gamb... 33 5.9
UniRef50_UPI00006CB7C3 Cluster: hypothetical protein TTHERM_0035... 33 7.8
>UniRef50_P62487 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=28; Bilateria|Rep: DNA-directed RNA polymerase
II subunit RPB7 - Homo sapiens (Human)
Length = 172
Score = 150 bits (364), Expect = 2e-35
Identities = 67/94 (71%), Positives = 79/94 (84%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KYKA+VFRPFKGEV+ +VTQVNKVG+F +IGP+ CFIS HSIP MEF PN NPPCYK+
Sbjct: 71 KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKT 130
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTLI 602
ED VIQ++D IRLKIVGTRVD + IFAIG+L+
Sbjct: 131 MDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLM 164
Score = 134 bits (324), Expect = 2e-30
Identities = 59/69 (85%), Positives = 65/69 (94%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 290 HGQGFVMYP 316
G+GFV+YP
Sbjct: 61 PGRGFVLYP 69
>UniRef50_O14459 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=10; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB7 - Schizosaccharomyces pombe (Fission
yeast)
Length = 172
Score = 108 bits (260), Expect = 1e-22
Identities = 52/93 (55%), Positives = 66/93 (70%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+AV++RPF+GEV+ IVT VNK+G FA IGPL F+S H +P M+F P NPP Y
Sbjct: 74 KYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSG 133
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
ED VI++ +RLKIVGTR D + IFAI T+
Sbjct: 134 --EDQVIEKGSNVRLKIVGTRTDATEIFAIATM 164
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = +2
Query: 113 FYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQID--NIGAGLI 286
F+ L I LHP YFGP++ + +K KL DVEGTC+G+YG++I V + +I G +
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 287 QHGQGFVMY 313
GQGF +
Sbjct: 63 VPGQGFAEF 71
>UniRef50_A2Y4G4 Cluster: Putative uncharacterized protein; n=6;
Eukaryota|Rep: Putative uncharacterized protein - Oryza
sativa subsp. indica (Rice)
Length = 265
Score = 103 bits (246), Expect = 5e-21
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+ VVFRPFKGE+L +VT VNK+G FA+ GP++ F+S+H IP MEF + + P Y +
Sbjct: 159 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF-QSGDVPNYTT 217
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
IQ++ +RLKI+GTRVD + IF IGT+
Sbjct: 218 SDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTI 250
Score = 77.4 bits (182), Expect = 3e-13
Identities = 29/57 (50%), Positives = 45/57 (78%)
Frame = +2
Query: 146 LHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYP 316
LHP++FGP L + + KL DVEGTC+G++GFV+A+T ++++G GLI+ G G+V +P
Sbjct: 101 LHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIREGTGYVTFP 157
>UniRef50_P38421 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=16; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 176
Score = 101 bits (242), Expect = 1e-20
Identities = 48/93 (51%), Positives = 64/93 (68%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+ VVFRPFKGE+L +VT VNK+G FA+ GP++ F+S H IP MEF + P Y +
Sbjct: 71 KYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAG-DMPNYTT 129
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
IQ+E +RLKI+GTRVD + IF +GT+
Sbjct: 130 SDGSVKIQKECEVRLKIIGTRVDATAIFCVGTI 162
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/69 (56%), Positives = 51/69 (73%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+HI LE + LHP++FG L E + KL DVEGTC+G++GFV+A+T ID IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 290 HGQGFVMYP 316
G GFV +P
Sbjct: 61 DGTGFVTFP 69
>UniRef50_Q54P04 Cluster: RNA polymerase II core subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 172
Score = 98.3 bits (234), Expect = 1e-19
Identities = 46/93 (49%), Positives = 62/93 (66%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KYKA++F+PFKGEVL IVT+V +G FA+ GPL F+S IP M F PC+ S
Sbjct: 71 KYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVS 130
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
+ I ++D +RL+I GTRVD + IFAIG++
Sbjct: 131 EDGSSKISKDDEVRLQIKGTRVDATEIFAIGSI 163
Score = 82.6 bits (195), Expect = 7e-15
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+H++LE ++ +HPK+ GP L Q+LY++VEGTCTG+YGF+I +T +D + G +
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60
Query: 290 HGQGFVMY 313
G+V++
Sbjct: 61 ESSGYVVF 68
>UniRef50_Q4P3H9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 170
Score = 98.3 bits (234), Expect = 1e-19
Identities = 49/100 (49%), Positives = 66/100 (66%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNV 479
GL+ Y+AVV +PFKGEV+ +T VNK+G FA++GPL F+S H IP +F P
Sbjct: 64 GLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQPES 123
Query: 480 NPPCYKSKQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
NPP + S + V + +R+KIVGTRVD + IFAIGT+
Sbjct: 124 NPPEFVSASDRLVKGRK--VRIKIVGTRVDANEIFAIGTM 161
Score = 72.5 bits (170), Expect = 8e-12
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+ L H+ LHP YFGP ++E + QKL DVEGTCTGK+G++I V + ++G G +
Sbjct: 1 MFFLKHLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGLVDVGQGKVI 60
Query: 290 HGQGFVMY 313
G G +
Sbjct: 61 PGSGLAEF 68
>UniRef50_Q7RCA7 Cluster: RNA polymerase II subunit 7; n=8;
Aconoidasida|Rep: RNA polymerase II subunit 7 -
Plasmodium yoelii yoelii
Length = 193
Score = 83.0 bits (196), Expect = 6e-15
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLX----------------GIVTQVNKVGMFAQIGPLKCF 431
G+ KY+A+VF+PFK EVL IVT VNK+G FAQ GPLK F
Sbjct: 64 GMIVVKVKYQAIVFKPFKDEVLFKINKLINKLIKSFVLDAIVTDVNKLGFFAQAGPLKIF 123
Query: 432 ISHHSIPXYMEFCPNVNPPCYKSKQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
IS +IP Y E+ + + PC+ S + I+ + +RLK+ G R D S +FAI T+
Sbjct: 124 ISRTAIPKYFEYNEDAHYPCFSSGSHN--IKPQTTVRLKLQGIRYDLSNMFAIATI 177
Score = 49.6 bits (113), Expect = 6e-05
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
M++ I +++ P GP+ + ++ L +EG CT KYG++I V +I + G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPKYQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQ 60
Query: 290 HGQGFVM 310
G G ++
Sbjct: 61 DGTGMIV 67
>UniRef50_Q0CNG9 Cluster: DNA-directed RNA polymerase II 19 kDa
polypeptide; n=7; Trichocomaceae|Rep: DNA-directed RNA
polymerase II 19 kDa polypeptide - Aspergillus terreus
(strain NIH 2624)
Length = 174
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/93 (41%), Positives = 60/93 (64%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+A++++PF+GE + IVT V G+F GPL FI+ +IP +++ PN PP Y +
Sbjct: 70 KYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLAVFIARKNIPSDIKWEPNTVPPQY-T 128
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
D VI++ +RLKI+G + D + I AIGT+
Sbjct: 129 DHADQVIEKGTSLRLKILGVKPDVAAINAIGTI 161
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+ I LHP YFGP + E + +L + EG CTG + FVI V + +IG G +
Sbjct: 1 MFFLKEETKVISLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 290 HGQGFVMY 313
G Y
Sbjct: 60 PSSGHAEY 67
>UniRef50_P34087 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=6; Saccharomycetales|Rep: DNA-directed RNA
polymerase II subunit RPB7 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 171
Score = 79.8 bits (188), Expect = 5e-14
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+AVVF+PFKGEV+ G V ++ G Q+GP+K F++ H +P + F NPP Y+S
Sbjct: 73 KYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQS 132
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
++ VI + IR+KI G S I AIG++
Sbjct: 133 SED--VITIKSRIRVKIEGCISQVSSIHAIGSI 163
Score = 62.1 bits (144), Expect = 1e-08
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNI 271
MF+ L I LHP +FGP++ + +K KL +VEG+CTGK+G+++ V DNI
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNI 54
>UniRef50_Q8SRG5 Cluster: DNA-DIRECTED RNA POLYMERASE II 19kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE II 19kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 155
Score = 74.1 bits (174), Expect = 3e-12
Identities = 38/93 (40%), Positives = 57/93 (61%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KYKA+ +P KGEV+ V + NK+G+FA +GPL FIS+H IP ++
Sbjct: 69 KYKALTLKPLKGEVIDANVVETNKMGVFASVGPLTVFISNHQIPNFLL------------ 116
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
+ I + +IRLKI+GT++D + I+A+GTL
Sbjct: 117 ---ENEITKNVMIRLKIIGTKIDSTRIYAVGTL 146
Score = 40.3 bits (90), Expect = 0.039
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLI 286
MF+ I L P Y GP + +++ L + VEG+C+ G+V+ V ID I I
Sbjct: 1 MFFVRDFVQNIHLSPNYLGPNIQALIEEYLLSKVEGSCSSS-GYVVMVLSIDEISESRI 58
>UniRef50_Q7SH68 Cluster: Putative uncharacterized protein
NCU02661.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU02661.1 - Neurospora crassa
Length = 169
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+ +LE + LHP YFG + E V KL DVEGTC G Y ++IA+ ++ G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDAFDVSEGRIL 59
Query: 290 HGQGFVMY 313
G G +
Sbjct: 60 PGNGLAEF 67
Score = 33.1 bits (72), Expect = 5.9
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVL 365
GL+ KY+AVV+RPFKGEVL
Sbjct: 63 GLAEFTVKYRAVVWRPFKGEVL 84
>UniRef50_A3FQ92 Cluster: DNA-directed RNA polymerase II, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: DNA-directed
RNA polymerase II, putative - Cryptosporidium parvum
Iowa II
Length = 178
Score = 57.2 bits (132), Expect = 3e-07
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLK-CFISHHSIPXYMEFCPN 476
GL KY+A+V+RP KGEV+ G+V VN++G+ GPLK F+S ++P M +
Sbjct: 64 GLIIVPVKYQAIVYRPIKGEVVDGVVESVNELGVIVDCGPLKRVFVSQSALPENMVYKSG 123
Query: 477 V---NPPCYKSKQEDXVIQEEDVIRLKIVG 557
+ + Y + I++ +RL++ G
Sbjct: 124 IDGQSSRIYIDTKTQIQIKQNSQVRLRLRG 153
Score = 42.3 bits (95), Expect = 0.010
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+ + L I + P GP+ E + L + VEG YG+V+ V +I G +Q
Sbjct: 1 MFFFVELWRNISVKPSQLGPRYNEHIDDILRSQVEGQRAPPYGYVVCVIKIILKQPGRVQ 60
Query: 290 HGQGFVMYPX*IQSCCVQTIQ 352
G ++ P Q+ + I+
Sbjct: 61 DSTGLIIVPVKYQAIVYRPIK 81
>UniRef50_Q98S95 Cluster: RNA polymerase II RPB7 subunit-like
protein; n=1; Guillardia theta|Rep: RNA polymerase II
RPB7 subunit-like protein - Guillardia theta
(Cryptomonas phi)
Length = 196
Score = 54.4 bits (125), Expect = 2e-06
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +3
Query: 300 GLSCTLXK--YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCP 473
G S L K ++AVV + FKGE++ IV + G+FA G L FIS+ I +
Sbjct: 89 GFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAGILNIFISNKFIS--QDLIS 146
Query: 474 NVNPPCYKSKQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
+ + K I++ D+IR KI+ + + I AIG +
Sbjct: 147 QQSQTLFNFKNSTINIKKNDIIRCKILNLKYNTGSIQAIGCI 188
>UniRef50_Q8LE42 Cluster: RNA polymerase II fifth largest
subunit-like protein; n=4; core eudicotyledons|Rep: RNA
polymerase II fifth largest subunit-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 174
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLK-CFISHHSIPXYMEFCPNVNP 485
+ + F+ FKGE++ G+V +V+K G+F + GP + ++SH +P Y EF P NP
Sbjct: 75 FNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGY-EFIPGENP 128
>UniRef50_A6QRA1 Cluster: At4g14660; n=5; Magnoliophyta|Rep:
At4g14660 - Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 49.6 bits (113), Expect = 6e-05
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLK-CFISHHSIPXYMEFCPNVNPPCYKS 500
+ + F+ FKGE++ G+V +V K G+F + GP++ ++S+ +P Y ++ P NP
Sbjct: 76 FSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDY-KYIPGENPIFMNE 134
Query: 501 KQEDXVIQEEDVIRLKIVGTR 563
K IQ E +R+ ++G +
Sbjct: 135 KTSR--IQVETTVRVVVIGIK 153
>UniRef50_Q57840 Cluster: DNA-directed RNA polymerase subunit E';
n=5; Methanococcales|Rep: DNA-directed RNA polymerase
subunit E' - Methanococcus jannaschii
Length = 187
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
M+ + + + + P+ FG L ETVK+ L EG GFV+++ + +IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 290 HGQGFVMYP 316
HG G +P
Sbjct: 61 HGDGSAYHP 69
>UniRef50_A7I4V6 Cluster: DNA-directed RNA polymerase; n=1;
Candidatus Methanoregula boonei 6A8|Rep: DNA-directed
RNA polymerase - Methanoregula boonei (strain 6A8)
Length = 213
Score = 47.2 bits (107), Expect = 3e-04
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
M+Y ++LE ++ + P G +L + + + L +EG+ + G IAVT+++++G G I
Sbjct: 1 MYYKMTLEDKVRVPPNRLGEKLDKVILEVLQEQLEGSIDKELGVFIAVTKVEHVGEGEIV 60
Query: 290 HGQGFVMY 313
G G V Y
Sbjct: 61 PGDGGVYY 68
Score = 32.7 bits (71), Expect = 7.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSI-PXYMEFC-PNVNPPCY 494
K++ +V R EV+ GIV + G F +GP+ + I Y+ F N C
Sbjct: 71 KFEGLVLRLALQEVIEGIVVETTSFGAFISLGPIDAMLHVSQISDEYINFDEKNARLICQ 130
Query: 495 KSKQEDXVIQEEDVIRLKIV 554
SK+ I D +R+++V
Sbjct: 131 DSKR---YIGVGDTVRVRVV 147
>UniRef50_Q4D3Y0 Cluster: RNA polymerase-like protein, putative;
n=3; Trypanosoma|Rep: RNA polymerase-like protein,
putative - Trypanosoma cruzi
Length = 190
Score = 43.2 bits (97), Expect = 0.006
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +3
Query: 291 MDKGLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQI-GPLKCFISHHSIPXYMEF 467
+D G L Y+A+VF+ +GEV+ +V V + G + + G K +IS + +
Sbjct: 79 LDDGGVSFLLHYEALVFKLHRGEVVDLMVVAVEREGWWGDVLGVGKMYISRGQMGSEWVY 138
Query: 468 CPNVNPPCYKSKQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTLIWRLFG 617
+ + +K ++ +++R+++V G+ AIG++I + G
Sbjct: 139 ESDGVEGIWITKDGSRSVKNGEIVRVRVVAETPQSEGVVAIGSMIGKYLG 188
>UniRef50_Q8PZ98 Cluster: DNA-directed RNA polymerase subunit E';
n=12; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit E' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 194
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
M+ + L + + P G +++ T+K L +EG K G ++AV ID +G G I
Sbjct: 1 MYKLMKLVDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60
Query: 290 HGQGFVMY 313
G G V Y
Sbjct: 61 VGDGAVYY 68
>UniRef50_Q8TVE1 Cluster: DNA-directed RNA polymerase subunit E';
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit E' - Methanopyrus kandleri
Length = 183
Score = 41.9 bits (94), Expect = 0.013
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSI-PXYMEFCPN 476
G S +++A+VFRP + EV+ G VT+V + G F ++GPL + I YM + +
Sbjct: 70 GASYHRVRFRALVFRPVEREVVVGEVTRVKEYGAFVRLGPLDGLLHVSQILDEYMYY--D 127
Query: 477 VNPPCYKSKQEDXVIQEEDVIRLKIVGTRVD 569
++ ++ DVI++ I+G ++
Sbjct: 128 GAREALVGEETGRELKRGDVIKVMIIGVSLN 158
>UniRef50_Q8ZSV9 Cluster: DNA-directed RNA polymerase subunit E';
n=4; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit E' - Pyrobaculum aerophilum
Length = 191
Score = 40.7 bits (91), Expect = 0.030
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKSK 503
+ + F P GEV+ G+V ++GM +IGP+ FI+ I + + Y +
Sbjct: 73 FTMLAFMPLDGEVVEGVVENAREMGMLVRIGPILGFINKIHIMDDPNIFFDASTKSYIGE 132
Query: 504 QEDXVIQEEDVIRLKIVG 557
+ + DV+R +I G
Sbjct: 133 RTKRRVSVGDVVRARITG 150
>UniRef50_A2F013 Cluster: RNA polymerase Rpb7, N-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb7, N-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 40.3 bits (90), Expect = 0.039
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+ + LEH++ L P + +T++++L EG G ++ +T+I IG G +
Sbjct: 11 MFFEVELEHQLKLLPIFLSQGTSQTIEKQLKHQKEGQFMLGKGLILKITKIIEIGKGRVS 70
Query: 290 HGQGFVMY 313
G Y
Sbjct: 71 SRTGCASY 78
Score = 40.3 bits (90), Expect = 0.039
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
K+KA+V RP++ V+ + +N+ + A GPL + + +F P YK
Sbjct: 81 KFKALVLRPYEDLVIDAKIMILNEFAIMANAGPLTVAVPKTLLEKDYDFEPET--LTYKQ 138
Query: 501 KQEDXVIQEEDVIRLKIVGT--RVDXSGIFAIGTLIWRLFG 617
K + + VIR+KI+ D I A G LI + G
Sbjct: 139 KNGGKTLGSKTVIRVKIITAVPHKDQIHISATGNLIDPILG 179
>UniRef50_Q2FTM9 Cluster: DNA-directed RNA polymerase; n=1;
Methanospirillum hungatei JF-1|Rep: DNA-directed RNA
polymerase - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 190
Score = 40.3 bits (90), Expect = 0.039
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
M+Y + L ++ + P G L + L +EG+ + G IAVT++ IG G +
Sbjct: 1 MYYRLELIDKVRVPPHRLGEDLTTVILDVLQEQLEGSIDKEIGIFIAVTKVLRIGEGEMV 60
Query: 290 HGQGFVMY 313
G G V Y
Sbjct: 61 PGDGAVYY 68
>UniRef50_A1RX94 Cluster: DNA-directed RNA polymerase; n=1;
Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase - Thermofilum pendens (strain Hrk 5)
Length = 222
Score = 38.3 bits (85), Expect = 0.16
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSI--PXYMEFCP 473
G S ++ A+VF P EV+ G V V +G+ ++GP++ F+ I + +
Sbjct: 91 GASYHEARFTALVFSPVNNEVVEGEVDLVENIGLTVRLGPVEGFVHKSQIYPSRNITYDR 150
Query: 474 NVNPPCYKSKQEDXVIQEEDVIRLKIVGTRVD 569
+ ++ I++ DV+R ++VG D
Sbjct: 151 ENGVVIIQDEKGTRTIRKGDVVRGRVVGVSYD 182
>UniRef50_Q4Q5F4 Cluster: RNA polymerase-like protein, putative;
n=3; Leishmania|Rep: RNA polymerase-like protein,
putative - Leishmania major
Length = 199
Score = 37.9 bits (84), Expect = 0.21
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Frame = +3
Query: 291 MDKGLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQI-GPLKCFISHHSIPXYM-- 461
+D G Y+A+V + +GEVL +V+ V++ G +A + G K F++ + + M
Sbjct: 79 LDDGSVSFRLTYEAMVLKLHRGEVLDLLVSDVDETGFWASVYGVNKLFVNRNQMGEDMKT 138
Query: 462 ---EFCPNVNPPCYKSKQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
E+ + S + I+++ ++RL+++ A+GT+
Sbjct: 139 GKSEWSFEAETAAWVSNDDRRSIKKDTMVRLRVIAETPQSERGMAVGTI 187
>UniRef50_A5UJM4 Cluster: DNA-dependent RNA polymerase, subunit E,
RpoE; n=2; Methanobacteriaceae|Rep: DNA-dependent RNA
polymerase, subunit E, RpoE - Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861)
Length = 185
Score = 37.5 bits (83), Expect = 0.28
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 291 MDKGLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSI-PXYMEF 467
M G S + A+ F+P + EV+ G V ++ + G F +IGP+ + + Y+ +
Sbjct: 58 MGDGASYHNVVFNAIFFKPEQQEVIDGEVIEIAEFGAFVRIGPMDGLVHVSQVTDDYINY 117
Query: 468 CPNVNPPCYKSKQEDXVIQEEDVIRLKIV 554
+ +K+ + + E D++R +IV
Sbjct: 118 --DSKRGALLAKESNKTLDEGDLVRTRIV 144
>UniRef50_UPI00015BAC65 Cluster: DNA-directed RNA polymerase,
subunit E'; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit E' - Ignicoccus
hospitalis KIN4/I
Length = 177
Score = 36.3 bits (80), Expect = 0.64
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKSK 503
+ + F+P + EV+ GIV V K G++ IGP+ + H + F +
Sbjct: 72 FTLLAFKPLRNEVVEGIVVNVTKNGIYVNIGPIDGMV-HKAQLGDERFEYDAATGSMVGT 130
Query: 504 QEDXVIQEEDVIRLKIV 554
VI+ D++R +IV
Sbjct: 131 STKTVIKRGDLVRARIV 147
>UniRef50_Q017Z0 Cluster: KIAA1665 protein; n=2; Ostreococcus|Rep:
KIAA1665 protein - Ostreococcus tauri
Length = 213
Score = 35.9 bits (79), Expect = 0.84
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +3
Query: 297 KGLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPL-KCFISHHSIPXYMEFCP 473
+G C ++K V+F+PF GEVL G + ++ G IG FI ++ E+
Sbjct: 73 EGCVCFEVEFKLVLFKPFTGEVLEGKLESSDEHGAHVSIGFFDDVFIPPSNMQDPSEWDE 132
Query: 474 NVNPPCYKSKQEDXVIQEEDVIRLKIVGTRVDXS 575
+ + E ++ + +R ++VG+R S
Sbjct: 133 DEKAWIWDYNGERIKLEVGEKVRFRVVGSRFPDS 166
>UniRef50_Q55FA4 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 356
Score = 35.5 bits (78), Expect = 1.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 327 KAVVFRPFKGEVLXGIVTQVNKVGMFAQI-GPLKCFISHHSIPXYMEFCPNVNPPCYKSK 503
K +VF+PFK ++L G+V +V+ + + G + I +IP F + N + +K
Sbjct: 90 KFLVFKPFKDQILNGVVKRVSTTHISLLVFGTISASIPKSNIPKSFAFDHSSN--MFMNK 147
Query: 504 QEDXVIQEEDVIRLKIVGTRVDXSGI 581
Q I I K++ D I
Sbjct: 148 QTKATISVGTKIAFKVIDVSADRHNI 173
>UniRef50_Q74MC3 Cluster: NEQ370; n=1; Nanoarchaeum equitans|Rep:
NEQ370 - Nanoarchaeum equitans
Length = 181
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
++K + ++P EV GI++ + G + IGP I H +
Sbjct: 72 RFKVLTWKPILKEVTLGIISNIVDFGAYVNIGPTDGLI--HISQIMDDIVDYSKDKVLAG 129
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSG 578
++ +++ ED+++ KIVG + G
Sbjct: 130 RKTKKILKIEDIVKAKIVGISIKPIG 155
>UniRef50_Q9YFJ0 Cluster: DNA-directed RNA polymerase subunit E;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit E - Aeropyrum pernix
Length = 186
Score = 35.1 bits (77), Expect = 1.5
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSI-PXYMEFCPNVNP-PCY 494
+Y+ + F+P + E++ G+VT+ + G+ +GPL + + I +E P+ +
Sbjct: 74 RYRVLAFKPVQLEIVRGVVTRADDFGLVVNLGPLDGKVHRNQIMDEGVELLPDRSGFVGL 133
Query: 495 KSKQEDXVIQEEDVIRLKIV 554
SK+E I+ DV+R ++V
Sbjct: 134 ASKRE---IRVGDVVRARVV 150
>UniRef50_Q0DJV3 Cluster: Os05g0224700 protein; n=2; Oryza
sativa|Rep: Os05g0224700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 782
Score = 34.7 bits (76), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLK-CFISHHSIPXYMEFCPNVNP 485
+ + +P KGE+L G V ++ K G+F + GP++ F+S ++ Y ++ NP
Sbjct: 77 FTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDY-KYIGGENP 130
>UniRef50_A2EZH9 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 2141
Score = 34.7 bits (76), Expect = 1.9
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 394 TLFTCVTIPXKTSPLNGLNTTALYLXRVHDKPLSMLYETSSDIVYLSYRDDKSIFASTGA 215
+LF C T K N ++ + + + +PL +L S + V+ D SI+AS G
Sbjct: 2001 SLFACSTTDCKIFVHNTMHNEFISMIQCEKEPLKLLITDSLNFVFADLGDSISIYASFGE 2060
Query: 214 FHISV 200
F SV
Sbjct: 2061 FICSV 2065
>UniRef50_A5B6S0 Cluster: Putative uncharacterized protein; n=2;
Magnoliophyta|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 237
Score = 34.3 bits (75), Expect = 2.6
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 69 LNGILTRNLSTAEKCSTTFHWSTKFCYI-RNISVHNYWRQSNRSYTLMWK-APVLANMD 239
L G + RNL T C T F S Y+ N +V+ YW R T WK PV M+
Sbjct: 100 LGGSIGRNLVTLFTCHTLFSASIYVTYLNENFAVYCYWVLLQRRITPQWKHIPVFPCMN 158
>UniRef50_Q7RK19 Cluster: Putative uncharacterized protein PY03086;
n=1; Plasmodium yoelii yoelii|Rep: Putative
uncharacterized protein PY03086 - Plasmodium yoelii
yoelii
Length = 1321
Score = 34.3 bits (75), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 180 SNSCGPKYFGCNKISCSNEMW*NIFQRWTNYEL 82
+N+ GP Y+ CN IS +++ N + + NYE+
Sbjct: 165 TNNYGPNYYNCNSISLNSDQVPNKYDEYINYEI 197
>UniRef50_Q557J3 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 252
Score = 34.3 bits (75), Expect = 2.6
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 315 LXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIG 416
+ +++ VVF+PFKGEVL G++ + ++ + +G
Sbjct: 68 MVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLG 101
>UniRef50_A6QZA4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 693
Score = 34.3 bits (75), Expect = 2.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGM 401
GL K++ +VFRPFKGEV+ G +T + G+
Sbjct: 64 GLVNVNVKFRLIVFRPFKGEVILGKITSGTENGI 97
>UniRef50_Q23EW2 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1353
Score = 33.9 bits (74), Expect = 3.4
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Frame = -2
Query: 434 YKTFERSYLRKHANLVYLCDNTX*NFSFEWSEHNSFVFXQGT*QTLVHVV*DQLRYCLFE 255
Y F + Y++ Y+ D + W+++N+FVF T Q + DQL
Sbjct: 460 YILFLKFYVKDQLKKQYIFDQNDFAWIAFWTDNNNFVFMMSTNQYNYY---DQLEGTFLF 516
Query: 254 LPR*QIHICQYRC---LPHQCIASV*LSPIVVDRNISDVTKFRAPMKCGRTFFS 102
+ I IC RC L + C+ S+ PI + +NI T+++ + F S
Sbjct: 517 ILSSNIQICVGRCDTNLINGCL-SLTNFPITIVKNIPYPTQYKLDINQSNPFSS 569
>UniRef50_A1C3X4 Cluster: DNA-directed rna polymerase III 25 kD
polypeptide; n=11; Pezizomycotina|Rep: DNA-directed rna
polymerase III 25 kD polypeptide - Aspergillus clavatus
Length = 216
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 300 GLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGM 401
GL K++ +VFRPFKGE++ G ++ + G+
Sbjct: 87 GLVNVNVKFRLIVFRPFKGEIMLGKISSATQQGI 120
>UniRef50_UPI000049988A Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 193
Score = 33.5 bits (73), Expect = 4.5
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPP-CYK 497
K++A+V + + EV+ GI++ VNK G+ +G K + H + C V CY+
Sbjct: 83 KFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWK---NIHVTASKVADCEYVEQSGCYR 139
Query: 498 SKQEDXVIQ 524
K Q
Sbjct: 140 DKDRTSQYQ 148
>UniRef50_A0DXK9 Cluster: Chromosome undetermined scaffold_69, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_69,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 229
Score = 33.5 bits (73), Expect = 4.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 375 VTQVNKVGMFAQIGPLKCFISHHSI-PXYMEFCPNVNPPCYKSKQEDXV 518
+ Q NK F G +KC ++HH I P EF +N YK+ E+ +
Sbjct: 30 LVQNNKHFEFLSSGKIKCLLTHHEILPTLQEFNNYLNGKSYKNAVENDI 78
>UniRef50_Q7QGV1 Cluster: ENSANGP00000012567; n=2; Anopheles gambiae
str. PEST|Rep: ENSANGP00000012567 - Anopheles gambiae
str. PEST
Length = 2184
Score = 33.1 bits (72), Expect = 5.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 213 STSVYSFCLTVSNSCGPKYFGCNKISCSNEMW 118
+T+ + C +CGPK+F CN C +M+
Sbjct: 1066 TTAQANGCARTGKTCGPKFFNCNNTRCVPQMY 1097
>UniRef50_UPI00006CB7C3 Cluster: hypothetical protein TTHERM_00353340;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00353340 - Tetrahymena thermophila SB210
Length = 2565
Score = 32.7 bits (71), Expect = 7.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 56 KTNLIEWNTNS*FVHR*KMFYHISLEHEILLHPKYFGPQLLETVKQKLY 202
KT WN N F+ + + Y +SL ++LLH YF + + QKLY
Sbjct: 1144 KTLQFYWNDNLFFLLKQSLKYKLSLRLKLLLHKSYF--DCMSELLQKLY 1190
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,493,256
Number of Sequences: 1657284
Number of extensions: 12179742
Number of successful extensions: 27559
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 26597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27546
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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