Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C20
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 108 6e-25
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 31 0.11
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 27 2.3
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 3.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.1
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 7.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 7.2
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 9.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 9.5
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 25 9.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.5
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 108 bits (260), Expect = 6e-25
Identities = 52/93 (55%), Positives = 66/93 (70%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+AV++RPF+GEV+ IVT VNK+G FA IGPL F+S H +P M+F P NPP Y
Sbjct: 74 KYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSG 133
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
ED VI++ +RLKIVGTR D + IFAI T+
Sbjct: 134 --EDQVIEKGSNVRLKIVGTRTDATEIFAIATM 164
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = +2
Query: 113 FYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQID--NIGAGLI 286
F+ L I LHP YFGP++ + +K KL DVEGTC+G+YG++I V + +I G +
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 287 QHGQGFVMY 313
GQGF +
Sbjct: 63 VPGQGFAEF 71
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPP 488
++ ++FRPF+GEV+ G + ++ G+ I F IP M F P V P
Sbjct: 72 FRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFDPCVFRP 122
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 140 ILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQG 301
I +HP F E + ++++ G I V IG G+I++G G
Sbjct: 11 ISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDG 64
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 113 FYHISLEHEILLHPKYF-GPQLLETVKQKLYT 205
FYH +E+ + + +YF GP+LL ++ Y+
Sbjct: 185 FYHAGMEYNVRVASRYFKGPELLVDFREYDYS 216
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 222 QVPSTSVYSFCLTVSNSCGPKYFGCNKISCSNEMW*NIFQRW 97
Q+ + +S +S P YF + + E+W N+F+ W
Sbjct: 856 QIETFKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDW 897
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 279 PAPILSI*VTAMTNPYLPVQVPSTSVYSFCLTVSNSCGPK 160
P P L V++ ++PY STS+YS +S SC P+
Sbjct: 172 PRPPLPSSVSSHSSPYSTTS--STSLYSLYNDISLSCSPE 209
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 232 IWICHRGNSNRQYRSWSHTTWTRV 303
IWIC+RG + + R S + W ++
Sbjct: 427 IWICYRGYTYLKERDSSKSYWDQI 450
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHH-----SIPXYME-FCPNVNP 485
+ ++F PF + + + + +NK IGP +C + + ++ Y+E C N N
Sbjct: 911 HSKLMFSPFSSQRIILLYSIINKETSVPCIGPERCLLEFYRETDCTLGQYIEDSCLNTNV 970
Query: 486 PC 491
C
Sbjct: 971 SC 972
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 328 LYLXRVHDKPLSMLYETSSDIVYLSYRDDKSIFA 227
+Y R H +PL++L ++ +V + +D +FA
Sbjct: 111 IYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFA 144
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 185 LSPIVVDRNISDVTKFRAPMKCGRTFF 105
L P +R+ S T F +PMK +FF
Sbjct: 223 LLPSAKNRSFSSFTSFESPMKYDDSFF 249
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 268 IVYLSYRDDKSIFASTGAFHI 206
I + S RDD I+A +G F+I
Sbjct: 93 ISFTSIRDDSVIYAQSGTFYI 113
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 294 DKGLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKV----GMFAQI--GPLKCFISHHSIPX 455
++G +CT + +V EVL G+V++ NK+ G+ Q+ GP+ I
Sbjct: 300 NQGEACTAAS-RLIVHESVADEVLGGLVSEANKLIIGNGLDPQVTLGPVVSKTQFEKIVS 358
Query: 456 YMEFCPNVNPPC 491
Y++ N C
Sbjct: 359 YIQSAINEGCKC 370
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 267 LSI*VTAMTNPYLPVQVPSTSVYSFCLTVSNSCG-PKYFGCNKI 139
L+I TA+ + +LP+++ T+ S+ +SC P F NK+
Sbjct: 472 LTIPHTAINDSWLPMKLKETNAISYYRKTCSSCKYPFQFFINKL 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,149
Number of Sequences: 5004
Number of extensions: 55709
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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