Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C20
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0244 - 19344418-19344483,19344961-19345029,19345355-193454... 102 2e-22
05_01_0416 + 3283403-3283930 38 0.009
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 35 0.065
07_03_0362 - 17217515-17217604,17217690-17217779,17217866-172179... 32 0.46
09_04_0109 - 14674980-14675004,14675861-14676468 28 5.6
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 28 5.6
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 9.8
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 27 9.8
>05_04_0244 -
19344418-19344483,19344961-19345029,19345355-19345420,
19345735-19345785,19345892-19346057,19346148-19346263
Length = 177
Score = 102 bits (245), Expect = 2e-22
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = +3
Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
KY+ VVFRPFKGE+L +VT VNK+G FA+ GP++ F+S+H IP MEF + + P Y +
Sbjct: 71 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF-QSGDVPNYTT 129
Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTL 599
IQ++ +RLKI+GTRVD + IF IGT+
Sbjct: 130 SDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTI 162
Score = 90.2 bits (214), Expect = 1e-18
Identities = 35/69 (50%), Positives = 53/69 (76%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+HI LE + LHP++FGP L + + KL DVEGTC+G++GFV+A+T ++++G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 290 HGQGFVMYP 316
G G+V +P
Sbjct: 61 EGTGYVTFP 69
>05_01_0416 + 3283403-3283930
Length = 175
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLK-CFISHHSIPXYMEFCPNVNPPCYKS 500
+ + +P KGEVL G V ++ K G+F + GP++ F+S ++ + ++ N
Sbjct: 77 FTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTMSDF-KYIGGENA---VF 132
Query: 501 KQEDXVIQEEDVIRLKIVGTR 563
E ++++ V+R K++G R
Sbjct: 133 MNEHSKLEKDTVVRFKVMGFR 153
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQ---LLETVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 277
+F + + +L+ P PQ L + V +L D+ K +G+ IAV+++ I
Sbjct: 2 VFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAISE 61
Query: 278 GLIQHGQGFVMYP 316
G ++ G V++P
Sbjct: 62 GKVRELTGDVLFP 74
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 YKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLK-CFISHHSIPXYMEFCPNVNP 485
+ + +P KGE+L G V ++ K G+F + GP++ F+S ++ Y ++ NP
Sbjct: 77 FTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDY-KYIGGENP 130
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQ---LLETVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 277
+F + + +L+ P P+ L + V L ++ K +G+ IAV+++ I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 278 GLIQHGQGFVMYP 316
G ++ G V++P
Sbjct: 62 GKVRELTGDVLFP 74
>07_03_0362 -
17217515-17217604,17217690-17217779,17217866-17217935,
17218362-17218425,17219117-17219204,17219631-17219726,
17219858-17219968
Length = 202
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 297 KGLSCTLXKYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYM 461
+G S ++ ++FRPF GEVL G ++ ++ G+ + F S SIP ++
Sbjct: 63 EGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLD----FFSDISIPGHL 113
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 285 MRPAPILSI*VTAMTNPYLPVQVPST 208
+RP+P++S A T+P LP+ VP+T
Sbjct: 137 LRPSPLISGRRQASTSPTLPLTVPAT 162
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 132 STKFCYIRNISVHNYWRQSNRSYTLMWKA 218
S + + R VHN W Q ++S+ MW+A
Sbjct: 562 SAELHWCRRGRVHNDWAQKHKSFVDMWEA 590
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 116 YHISLEHEILLHPKYFGPQLLETVKQKLYTDVEG 217
Y + L H + +HPK F L Q+L D++G
Sbjct: 446 YSMLLRHNVDMHPKSFAVGLRIEHPQELINDIQG 479
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 233 ICQYRCL-PHQCIASV*LSPIVVDRNISDVTKFRAPMK 123
IC Y L PH + S L+ + D+N+S++ FR +K
Sbjct: 261 ICWYLVLAPHDPMQSSLLNATLEDKNLSEIPNFRLLLK 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,679
Number of Sequences: 37544
Number of extensions: 329187
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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