Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C20
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    30   1.9  
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                29   2.5  
SB_23912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 12/50 (24%), Positives = 30/50 (60%)
 Frame = +2

Query: 122 ISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNI 271
           + ++  + L PKY   +++  V+ ++ + V G CT + G+V++V ++  +
Sbjct: 249 VVIKRRLFLDPKYLDSEIMNHVRDEIVSTVVGECTRELGWVLSVGRLTEV 298


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 72  NGILTRNLSTAEKCSTTFHWSTKFCYIRNISVHNYWRQSN 191
           N  +  N ST + CST  +WST      N S HN W   N
Sbjct: 357 NWSILNNWSTYDNCSTYNNWSTH----NNWSTHNNWSTYN 392


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +1

Query: 259 NRQYRSWSHTTWTRVCHVPXLNTKLLCSDHSKEKFXMVLSHK*TRL---ACLR--K*DLS 423
           N QYR W  T W +  H P +  +  C D S  K    +S   T++    C    K  LS
Sbjct: 155 NAQYRDWFETKWAKT-H-PDMVPRSCCKDPSDSKCNENISKDPTKIYRRGCYMFVKKYLS 212

Query: 424 NVLYPIIQYXTIWSSVL 474
           N L+ +I    IW +V+
Sbjct: 213 NNLH-VISGFGIWIAVI 228


>SB_23912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 309 MTNPCPCCMRPAPILSI*VTAMTNPYLPVQVPSTSVYSFCLTVSNSC 169
           +T PC     P  +L+I    +T P L +  P   + + CL ++  C
Sbjct: 488 LTTPCLVLTTPCLVLTIPCLVLTTPCLVLTTPCLVLTTPCLVLTTPC 534



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 309 MTNPCPCCMRPAPILSI*VTAMTNPYLPVQVPSTSVYSFCLTVSNSC 169
           +T PC     P  +L+     +T P L + +P   + + CL ++  C
Sbjct: 474 LTTPCLVLTTPCLVLTTPCLVLTTPCLVLTIPCLVLTTPCLVLTTPC 520



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 309 MTNPCPCCMRPAPILSI*VTAMTNPYLPVQVPSTSVYSFCLTVSNSC 169
           +T PC     P  +L+     +T P L +  P   + S CL ++  C
Sbjct: 579 LTTPCLVLTTPCLVLTTPCLVLTTPGLVLTTPGLVLTSPCLVLTTPC 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,869,938
Number of Sequences: 59808
Number of extensions: 414843
Number of successful extensions: 1206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)