Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C20
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52427-1|AAB96827.1|  172|Homo sapiens RNA polymerase II seventh...   150   4e-36
U20659-1|AAA86500.1|  172|Homo sapiens RNA polymerase II subunit...   150   4e-36
BC112164-1|AAI12165.1|  172|Homo sapiens DNA directed RNA polyme...   150   4e-36
BC112162-1|AAI12163.1|  172|Homo sapiens DNA directed RNA polyme...   150   4e-36

>U52427-1|AAB96827.1|  172|Homo sapiens RNA polymerase II seventh
           subunit protein.
          Length = 172

 Score =  150 bits (364), Expect = 4e-36
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +3

Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
           KYKA+VFRPFKGEV+  +VTQVNKVG+F +IGP+ CFIS HSIP  MEF PN NPPCYK+
Sbjct: 71  KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKT 130

Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTLI 602
             ED VIQ++D IRLKIVGTRVD + IFAIG+L+
Sbjct: 131 MDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLM 164



 Score =  134 bits (324), Expect = 3e-31
 Identities = 59/69 (85%), Positives = 65/69 (94%)
 Frame = +2

Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
           MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 290 HGQGFVMYP 316
            G+GFV+YP
Sbjct: 61  PGRGFVLYP 69


>U20659-1|AAA86500.1|  172|Homo sapiens RNA polymerase II subunit
           hsRPB7 protein.
          Length = 172

 Score =  150 bits (364), Expect = 4e-36
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +3

Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
           KYKA+VFRPFKGEV+  +VTQVNKVG+F +IGP+ CFIS HSIP  MEF PN NPPCYK+
Sbjct: 71  KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKT 130

Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTLI 602
             ED VIQ++D IRLKIVGTRVD + IFAIG+L+
Sbjct: 131 MDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLM 164



 Score =  134 bits (324), Expect = 3e-31
 Identities = 59/69 (85%), Positives = 65/69 (94%)
 Frame = +2

Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
           MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 290 HGQGFVMYP 316
            G+GFV+YP
Sbjct: 61  PGRGFVLYP 69


>BC112164-1|AAI12165.1|  172|Homo sapiens DNA directed RNA
           polymerase II polypeptide G protein.
          Length = 172

 Score =  150 bits (364), Expect = 4e-36
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +3

Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
           KYKA+VFRPFKGEV+  +VTQVNKVG+F +IGP+ CFIS HSIP  MEF PN NPPCYK+
Sbjct: 71  KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKT 130

Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTLI 602
             ED VIQ++D IRLKIVGTRVD + IFAIG+L+
Sbjct: 131 MDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLM 164



 Score =  134 bits (324), Expect = 3e-31
 Identities = 59/69 (85%), Positives = 65/69 (94%)
 Frame = +2

Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
           MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 290 HGQGFVMYP 316
            G+GFV+YP
Sbjct: 61  PGRGFVLYP 69


>BC112162-1|AAI12163.1|  172|Homo sapiens DNA directed RNA
           polymerase II polypeptide G protein.
          Length = 172

 Score =  150 bits (364), Expect = 4e-36
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +3

Query: 321 KYKAVVFRPFKGEVLXGIVTQVNKVGMFAQIGPLKCFISHHSIPXYMEFCPNVNPPCYKS 500
           KYKA+VFRPFKGEV+  +VTQVNKVG+F +IGP+ CFIS HSIP  MEF PN NPPCYK+
Sbjct: 71  KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKT 130

Query: 501 KQEDXVIQEEDVIRLKIVGTRVDXSGIFAIGTLI 602
             ED VIQ++D IRLKIVGTRVD + IFAIG+L+
Sbjct: 131 MDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLM 164



 Score =  134 bits (324), Expect = 3e-31
 Identities = 59/69 (85%), Positives = 65/69 (94%)
 Frame = +2

Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
           MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 290 HGQGFVMYP 316
            G+GFV+YP
Sbjct: 61  PGRGFVLYP 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,177,732
Number of Sequences: 237096
Number of extensions: 1956983
Number of successful extensions: 3575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3575
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)