Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C18
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)                   29   2.0  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   8.1  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  27   8.1  

>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
          Length = 185

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 158 SLLIYLAAFVICECPVIGARGWSLLLDFAYLRLWDSETCLRILTTKCSAN 307
           ++LI + AFV+C  P      W L    A    W +   L +  T  S N
Sbjct: 99  TILIIIGAFVVCWLPYSIGTSWKLATGHALELYWFANVGLTLALTNSSLN 148


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
 Frame = -2

Query: 498 RPRSPLHRHNGID-LTAASAPPGTARRTTLSPCH*HLNTH-------TRARASTSRDVVC 343
           + ++P  R N ++  TAA+  P  +RR+++SP    L +        +R    TSR    
Sbjct: 151 KKKTPPRRTNLLEAFTAAAGTPAGSRRSSISPASPALRSSLGSLAPTSRTSTPTSRSTPR 210

Query: 342 TXARXQTRTP 313
           + +R + RTP
Sbjct: 211 SRSRSRARTP 220


>SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = -2

Query: 435 GTARRTTLSPCH*HLNTHTRARASTSRDVVCTXAR 331
           G+ARRT     H H  THT AR  T+  VV T AR
Sbjct: 44  GSARRTRT---HTHARTHTHARTHTNTKVV-TVAR 74


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 169 IPCCIRDL*VSCNRSAWLVFVVGFRLFTVVGQ*NVSTYTNYKV 297
           IP  +    V CN S  +VFVVG R FT       +   N+KV
Sbjct: 288 IPFNVNGPCVVCNNSLTVVFVVGGRNFTAKKSFIKAVIDNFKV 330


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 477 RHNGIDLTAASAPPGTARRTTLSPCH*HLNTHTRARASTSRDVVCT 340
           R NG D    +       R  + PCH +L  H+    S+SR +V T
Sbjct: 535 RRNGRDCQPHAQDKSPPPRVLMLPCHQYLTIHSNIN-SSSRQLVST 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,615
Number of Sequences: 59808
Number of extensions: 304060
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)