Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C18
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 181 CSKVYE*TKITKSSIL*TAGLLSQLEESSSVYR 83
           C +  + T +TK     TA  ++Q++E++ VY+
Sbjct: 203 CFQQAQTTYVTKEVATGTASEITQIQEATLVYK 235


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 449 AAVKSMPLCRWSGDRGLTTXLQQRW 523
           AAV  +P+  W GD  L    +  W
Sbjct: 113 AAVAFVPISGWHGDNMLEVSSKMPW 137


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 449 AAVKSMPLCRWSGDRGLTTXLQQRW 523
           AAV  +P+  W GD  L    +  W
Sbjct: 129 AAVAFVPISGWHGDNMLEVSSKMPW 153


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 449 AAVKSMPLCRWSGDRGLTTXLQQRW 523
           AAV  +P+  W GD  L    +  W
Sbjct: 186 AAVAFVPISGWHGDNMLEVSSKMPW 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,661
Number of Sequences: 438
Number of extensions: 2597
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)