Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C18
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)...    29   1.6  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   3.8  
At4g08025.1 68417.m01287 hypothetical protein                          28   5.0  
At1g32420.1 68414.m04002 F-box family protein contains F-box dom...    28   5.0  
At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3)...    27   6.6  
At3g44115.1 68416.m04729 hypothetical protein                          27   8.7  

>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
           gibberellin-responsive protein 2 identical to SP|P46688
           Gibberellin-regulated protein 2 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 513 CSXVVRPRSPLHRHNGIDLTAASAPPGTARRTTLSPCH*HLNTH 382
           CS   R +  L   N         PPGT+  T L PC+  + TH
Sbjct: 49  CSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTH 92


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 285 SIRRHVSLSHNRK*AKSNNKDQPRAPITGHSQITNAARYMSKLKSQNRQFYEQPA 121
           S+RR  SLS  R+   S  + + R+PI  H + T+  R  S   S+ R+    PA
Sbjct: 265 SVRR--SLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPA 317


>At4g08025.1 68417.m01287 hypothetical protein
          Length = 115

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 254 LWDSETCLRILTTKCSANFWGVRV*XRAXVQTTSREVLARARVC 385
           LWD  TCL  +T KC+ N   V       +++  ++++   +VC
Sbjct: 35  LWD--TCLVKITPKCALNIIAVVFGNGTLIESCCKDLVQEGKVC 76


>At1g32420.1 68414.m04002 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 302

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 266 HCPTTVNKRNPTTK 225
           HCPTTV+  NPTT+
Sbjct: 141 HCPTTVDIYNPTTR 154


>At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3) /
           gibberellin-responsive protein 3 identical to SP|P46687
           Gibberellin-regulated protein 3 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -2

Query: 513 CSXVVRPRSPLHRHNGIDLTAASAPPGTARRTTLSPCH*HLNT 385
           CS   RP   L   N         PPGTA    L PC+  + T
Sbjct: 49  CSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITT 91


>At3g44115.1 68416.m04729 hypothetical protein
          Length = 115

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 254 LWDSETCLRILTTKCSANFWGVRV*XRAXVQTTSREVLARARVC 385
           LWD  TCL  +T KC+ N   V       +++   +++   +VC
Sbjct: 35  LWD--TCLVKITPKCALNIIAVVFGNGTLIESCCHDLVQEGKVC 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,909,225
Number of Sequences: 28952
Number of extensions: 189318
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)