Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C16
         (632 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5; Endoptery...    83   7e-15
UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome s...    35   1.4  
UniRef50_Q67MX0 Cluster: 2-isopropylmalate synthase; n=7; Bacter...    35   1.9  
UniRef50_Q5TAT6 Cluster: Collagen alpha-1(XIII) chain; n=75; Amn...    35   1.9  
UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  
UniRef50_UPI0000F2D440 Cluster: PREDICTED: similar to Pla2g4c pr...    33   4.3  
UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;...    33   4.3  
UniRef50_UPI0000F1ED14 Cluster: PREDICTED: similar to autoantige...    33   5.7  
UniRef50_A3K146 Cluster: LysM domain protein; n=1; Sagittula ste...    33   5.7  
UniRef50_UPI000155F5F1 Cluster: PREDICTED: hypothetical protein;...    33   7.5  
UniRef50_Q27W72 Cluster: NigAIII; n=1; Streptomyces violaceusnig...    33   7.5  
UniRef50_Q28LC0 Cluster: Putative uncharacterized protein; n=5; ...    32   10.0 
UniRef50_Q2H0A9 Cluster: Predicted protein; n=1; Chaetomium glob...    32   10.0 
UniRef50_Q5TZA2 Cluster: Rootletin; n=40; Amniota|Rep: Rootletin...    32   10.0 

>UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5;
           Endopterygota|Rep: Ornithine decarboxylase - Bombyx mori
           (Silk moth)
          Length = 444

 Score = 82.6 bits (195), Expect = 7e-15
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = +3

Query: 513 MKVVEEQRIRVMEGSWSPVSVIREIVESGVXEDPFYVMDL 632
           MKVVEEQRIRVMEGSWSPVSVIREIVESGV EDPFYVMDL
Sbjct: 1   MKVVEEQRIRVMEGSWSPVSVIREIVESGVQEDPFYVMDL 40


>UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 19 SCAF14691, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1400

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 264 TSPQRRPALAAPCQGPLTP 320
           TSP RRP+L  PC+GPL+P
Sbjct: 886 TSPVRRPSLLMPCEGPLSP 904


>UniRef50_Q67MX0 Cluster: 2-isopropylmalate synthase; n=7;
           Bacteria|Rep: 2-isopropylmalate synthase -
           Symbiobacterium thermophilum
          Length = 556

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 435 TVDRGAGPRRARDK-LRKQVHVKLDNTMKV-VEEQRIRVMEGSWSPVSVIREIVESGVXE 608
           T   G+GP  A D+ LRK +     +  ++ + + ++RV+EGS    +V+R ++ESG  E
Sbjct: 454 TAAEGSGPVHALDRALRKALTEVYPSVARMELRDYKVRVLEGSQGTGAVVRVLIESGDGE 513


>UniRef50_Q5TAT6 Cluster: Collagen alpha-1(XIII) chain; n=75;
           Amniota|Rep: Collagen alpha-1(XIII) chain - Homo sapiens
           (Human)
          Length = 717

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +2

Query: 545 DGGIVVPGQRDPGDRGERGAXGPLLRDGP 631
           DG +  PGQ  PGD+GERGA G    DGP
Sbjct: 405 DGQVGPPGQ--PGDKGERGAAGEQGPDGP 431


>UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 198

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 381 GAWSWGPTSASPQVSGECGEVASAGPGTAQPGR 283
           G +SWG   A+P   G    V++ GPG A  GR
Sbjct: 34  GRFSWGARKATPAAKGPADGVSACGPGNAGAGR 66


>UniRef50_UPI0000F2D440 Cluster: PREDICTED: similar to Pla2g4c
           protein; n=2; Monodelphis domestica|Rep: PREDICTED:
           similar to Pla2g4c protein - Monodelphis domestica
          Length = 629

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 504 DNTMKVVEEQRIRVMEGSWSPVSVIREIVESGVXEDPFYVMDL 632
           D+  +  EE ++R+ EGSW+P + ++ I E+    + F + D+
Sbjct: 157 DHLAEAEEELKVRLQEGSWNPGTALKGIQEAARRSENFSLTDI 199


>UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 166

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 281 TRPG--CAVPGPADATSPHSPDTCGLALVGPQDQAP 382
           +RPG  C  P PA ++ P +P + G +L GP   AP
Sbjct: 23  SRPGLPCLPPDPASSSQPPTPGSSGSSLQGPDSPAP 58


>UniRef50_UPI0000F1ED14 Cluster: PREDICTED: similar to autoantigen;
            n=5; Danio rerio|Rep: PREDICTED: similar to autoantigen -
            Danio rerio
          Length = 1375

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 551  GIVVPGQR-DPGDRGERGAXGPLLRDGP 631
            GI +PGQ   PG RGE+G  GPL   GP
Sbjct: 1043 GIGIPGQPGSPGPRGEQGLDGPLGPQGP 1070


>UniRef50_A3K146 Cluster: LysM domain protein; n=1; Sagittula
           stellata E-37|Rep: LysM domain protein - Sagittula
           stellata E-37
          Length = 598

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
 Frame = +2

Query: 191 SPARVAVPGGTDAHXXXXXXXXXXDEPST*TRPGCAVPG----PADATSPHSPDTCGLAL 358
           S  R A PGG D            D+P        A PG    PADA +P    +     
Sbjct: 342 SAPRPATPGGLDLASTSGSAPVATDDPEAPPSVATAEPGAPAMPADAAAPAGTPSAQDTD 401

Query: 359 VGPQDQAPTTLDTANPDS 412
           +  +D AP   +T  P +
Sbjct: 402 IASRDPAPQPDETGAPQA 419


>UniRef50_UPI000155F5F1 Cluster: PREDICTED: hypothetical protein;
           n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
           - Equus caballus
          Length = 846

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -2

Query: 595 LSTISRITLTGDHDPSITLMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVPFPCNV 416
           +ST  ++ L     PS    RC + +    S+ +W C   L R   G  P S  P+P   
Sbjct: 378 ISTWKKMYLKNPTPPSSISXRCXAVSARPXSSSSWAC-PPLGRTTSGTGPSSASPWPSVS 436

Query: 415 SAVRVSGVKCRRSLV 371
           S      +   RSL+
Sbjct: 437 SGEHWVSLSXLRSLI 451


>UniRef50_Q27W72 Cluster: NigAIII; n=1; Streptomyces
            violaceusniger|Rep: NigAIII - Streptomyces violaceoniger
          Length = 4083

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 302  PGPADATSPHSPDTCGLALVGPQDQAPTTLD-TANPD 409
            P P    SP  P T   AL+GP+DQAP   D  A+PD
Sbjct: 1277 PYPISVDSP--PRTASWALIGPRDQAPAAPDLPAHPD 1311


>UniRef50_Q28LC0 Cluster: Putative uncharacterized protein; n=5;
           Rhodobacterales|Rep: Putative uncharacterized protein -
           Jannaschia sp. (strain CCS1)
          Length = 221

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 629 VHHVEGVLXHPALHDLPDHADRGPRSLHHSDALFLHNLHGVIQLYVDLFP*FIPG 465
           +H    V+  P   D PD   +G   L H   LF  N +G    Y+D F   IPG
Sbjct: 48  IHFARWVIIKP--RDWPD-LGQGKEKLQHDYMLFCSNFNGTWDQYIDAFSDGIPG 99


>UniRef50_Q2H0A9 Cluster: Predicted protein; n=1; Chaetomium
           globosum|Rep: Predicted protein - Chaetomium globosum
           (Soil fungus)
          Length = 221

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +3

Query: 414 ETLQGNGTVDRGAGPRRARDKLRKQVHVKLDNTMKVVEEQRIRVMEGSWSPV 569
           E L GNG   RG   RRAR  LR+    + D     VEE+ +R +EG +  V
Sbjct: 173 EVLDGNGDAVRG---RRARAVLRRGPSKERDGAGGEVEEEDVREVEGGFELV 221


>UniRef50_Q5TZA2 Cluster: Rootletin; n=40; Amniota|Rep: Rootletin -
            Homo sapiens (Human)
          Length = 2017

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +2

Query: 191  SPARVAVPGGTDAHXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 340
            SPA   VPG               + PST    PG   P P  ATSP SPD
Sbjct: 1451 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,387,432
Number of Sequences: 1657284
Number of extensions: 11974324
Number of successful extensions: 40386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40275
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)