Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C16
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.56 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.1  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 225 THTPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 323
           T  PP          P+R P+L+AP   P+ PP
Sbjct: 227 TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 528 EQRIRVMEGSWSPVSVIREIVESGVXEDPFYVMDL 632
           E RI  + G+  PV+VIR  V+  V  D   + DL
Sbjct: 245 ENRIHSIIGAPQPVTVIRNQVKQTVLADDLVIGDL 279


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 408 SGLAVSSVVGAWSWGPTSAS 349
           SGL  SS V AW+W  T  S
Sbjct: 54  SGLISSSTVSAWTWPATLLS 73


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 408 SGLAVSSVVGAWSWGPT 358
           +GL  S+VV +W+W  T
Sbjct: 55  TGLVASAVVSSWTWAST 71


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 471 DKLRKQVHVKLDNTMKVVEEQRIRVMEGS 557
           D + +QVH++L++  ++V + RIR   G+
Sbjct: 356 DAMVRQVHMQLESVERIVPDIRIRNSVGT 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,368
Number of Sequences: 5004
Number of extensions: 39534
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)