Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C16
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               30   1.4  
SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               27   9.6  
SB_21796| Best HMM Match : COLFI (HMM E-Value=0)                       27   9.6  

>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 553 PSITLMRCSSTTFMVLSNFTWTCFLSLSR-ARRGPAPRST 437
           PS+   +C+ T F+V S F  T     +R +RR P PR+T
Sbjct: 107 PSLPEFKCNPTPFVVASCFNRTQVTKSARNSRRAPYPRNT 146


>SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 496 TWTCFLSLSRARRGPAPRSTVPFP 425
           T  CFL+L   RR P  R  +P+P
Sbjct: 174 TKICFLNLELTRRNPTRRKFLPYP 197


>SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 607 SCTPLSTISRITLTGDHDPSITLMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 431
           +CTP+ T+  I+ T  H P+I  +   +     L + TW   L+    +R P  R+  P
Sbjct: 7   TCTPV-TLPFISCTPVHPPNIATVLTLTPLEKSLVDLTWIRTLARLLEKRSPYHRAIAP 64


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 560  VPGQRDPGDRGERGAXGPL 616
            VPG+  P   GE+GA GP+
Sbjct: 3535 VPGEPGPAGNGEKGAIGPI 3553


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 586 ISRITLTGDHDPSITLMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTV 434
           + +I +  DHD  I ++ CS++    L N T+   L++ + R     RSTV
Sbjct: 274 VQKILVHWDHDGDIYMLGCSNSGKTTLFN-TFMDLLNVHKRRGNMLQRSTV 323


>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
          Length = 1239

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 569  QRDPGDRGERGAXGPLLRDGP 631
            Q DPG  GERG  GP    GP
Sbjct: 964  QGDPGPEGERGQSGPPGPPGP 984


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,458
Number of Sequences: 59808
Number of extensions: 379734
Number of successful extensions: 1028
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)