Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C16
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40540.1 68418.m04920 protein kinase, putative similar to pro...    29   3.4  
At3g61800.1 68416.m06935 expressed protein                             29   3.4  
At5g51550.1 68418.m06392 phosphate-responsive 1 family protein s...    28   4.5  
At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof...    28   5.9  

>At5g40540.1 68418.m04920 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 353

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 326 PHSPDTCGLALVGPQDQAPTTLDTA 400
           P SP TC L  V  +DQ PT  ++A
Sbjct: 316 PESPGTCSLMTVRDKDQIPTDANSA 340


>At3g61800.1 68416.m06935 expressed protein 
          Length = 664

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 213 RAERTHTPPXXXXXXXXTSPQRRPALAAPCQGPLTP 320
           R ERT TPP           QRR     P  GP+ P
Sbjct: 467 REERTETPPCRASLKKGGLCQRRDLRVCPFHGPIVP 502


>At5g51550.1 68418.m06392 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 337

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 426 LVTFQLSGLAVSSVVGAWSWGPTSASP-QVSGECGEVASAGPGTAQPGRV 280
           ++  +++ LA + +V AW  GP   +P +++  C  +   G G +  G++
Sbjct: 250 VIAHEIAELATNPLVNAWYAGPDPVAPVEIADLCEGIYGTGGGGSYTGQM 299


>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 517

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 204 WQCRAERTHTPPXXXXXXXXTSPQRRPALAAPCQGPLTPPHHIHLTLV 347
           W+ + +R  + P          P   P L  P   PLTPP    L LV
Sbjct: 288 WKNKVQRETSTPPPIETKTPPLPPPPPTLTQPHPKPLTPPPRRFLKLV 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,653,985
Number of Sequences: 28952
Number of extensions: 244560
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)