Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C12
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   4.3  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    23   9.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    23   9.8  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 86  NFSVTHPSYKQ 54
           NF  THPSYKQ
Sbjct: 626 NFITTHPSYKQ 636


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 233 KCTPIRCKNVFIFLFKNIIYL 171
           KC P+  K VF+    NI Y+
Sbjct: 427 KCAPVPVKRVFLLNRVNIAYI 447


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 152 TSHSFTTIKVXYSXNIFLIICNNFSVTHPSYKQL 51
           T  SFT  K   S  I  ++   F  T PSY ++
Sbjct: 421 TEASFTIFKAKLSKVIASVLDRAFRFTPPSYSEV 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,540
Number of Sequences: 5004
Number of extensions: 13183
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)