Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C12
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    28   2.0  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    28   2.0  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 194 LFKNIIYLCEGVLMTSHSFTTI 129
           LFK  + LCEGV  T HS  T+
Sbjct: 134 LFKRYMRLCEGVNSTVHSLETV 155


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 194 LFKNIIYLCEGVLMTSHSFTTI 129
           LFK  + LCEGV  T HS  T+
Sbjct: 451 LFKRYMRLCEGVNSTVHSLETV 472


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 224 PIRCKNVFIFLFKNIIYLCEGVLMTSHSFTTIKVXYSXNIFLIIC 90
           P  C  V+I LF N++Y    +  +    TT+        F++ C
Sbjct: 283 PSACLYVYINLFHNVLYSTRWMYTSVQVSTTVVTCSKVANFILFC 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,378
Number of Sequences: 27780
Number of extensions: 76062
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)