Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C12
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    27   3.3  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    27   3.3  

>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 164 GVLMTSHSFTTIKVXYSXNIFLIIC-NNFSVTHPSYKQL*QVIP 36
           G+L+  HS   +    +   F  IC NNF +   +YK+L Q++P
Sbjct: 56  GILLNDHSPGVVGAAAAA--FTSICPNNFKLIGKNYKKLCQILP 97


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 164 GVLMTSHSFTTIKVXYSXNIFLIIC-NNFSVTHPSYKQL*QVIP 36
           G+L+  HS   +    +   F  IC NNF +   +YK+L Q++P
Sbjct: 56  GILLNDHSPGVVGAAAAA--FTSICPNNFKLIGKNYKKLCQILP 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,254,427
Number of Sequences: 28952
Number of extensions: 60707
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)