Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C08
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   5.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   7.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.2  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.5  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 246 WVQRMALSCSRLHGNTSCLFVLSL 175
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 612 FTSQPPNGPVTIEQTKLSL--YFHTTHDSXVAFVLKG 508
           F+   PN  ++I     SL  YF   +D  +AF+ KG
Sbjct: 223 FSHNKPNNQISISTFYSSLDPYFRAFNDDDIAFLKKG 259


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 609 TSQPPNGPVTIEQTKLSLYFHTTHDSXVAFVLKGS 505
           T++P + PV+ EQ+  S+   ++  S +  VLKGS
Sbjct: 402 TNKPVSMPVSTEQSDPSVAASSSSSSQLDVVLKGS 436


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 400 FNLICFHILNFCLIAFGCVRVVENDINAGSSHYIIGPFQNKSYXTVVCCVEI 555
           F L    +L   L+ F    V++  +  GSS  I+G  + K +   +C  ++
Sbjct: 599 FGLDYAELLGSSLLDFQPATVLDMKLLNGSSILILGKLKEKCFLCEICLADV 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,099
Number of Sequences: 5004
Number of extensions: 53026
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)