Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C08
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    33   0.13 
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    33   0.13 
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41535-14|AAB63404.1|  169|Caenorhabditis elegans Hypothetical p...    27   8.7  
U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protei...    27   8.7  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 244 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 113
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 57


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 244 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 113
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 186


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 217 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLNR 89
           SPS K+F     E G   R P+G P++S Q+ +  +QP TL +
Sbjct: 107 SPSPKYFKID--ENGKISRLPTGIPTVSIQREAFMTQPTTLRK 147


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 7   INVFLCGAHVFACVVNFFG-CSRLPP 81
           +++  C  H+F C + FFG CSR  P
Sbjct: 550 VSITWCDRHIFRCSIPFFGFCSRCEP 575


>U41535-14|AAB63404.1|  169|Caenorhabditis elegans Hypothetical
           protein F18A1.8 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 253 GSMGPADGALLLS---PSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPAS 110
           G+  P    L LS   P+ + FL   ++  S     SG+P ++PQK +P S
Sbjct: 101 GTGSPLSAGLSLSNPLPAGRGFLSPAIQNTSNQFTFSGSPRITPQKHTPVS 151


>U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protein
           171 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -1

Query: 259 ATGSMGPADGALLLSPSRKHFLFICVE--PGST----PRCPSGTPSMSPQKGSPASQPY 101
           A G+ GP DG      S   F F C    PG      P+ P+G P    Q G+P +  +
Sbjct: 140 APGTNGP-DGRPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGAPGNNGF 197


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 286 VREVRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQ 107
           +R+++   AA GSM P+  +    P   H+      PG  P  P G P  +     P   
Sbjct: 379 MRQMQQAAAAAGSMPPSYPSPGQYPGPMHY------PGMPPMMPPGAPFSAGASYPPMGG 432

Query: 106 PYTLN 92
           P+  N
Sbjct: 433 PFPPN 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,123,827
Number of Sequences: 27780
Number of extensions: 326303
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)