Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C06
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.19
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.44
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 1.0
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 28 1.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 3.1
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 27 3.1
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 4.1
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 4.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 9.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 9.5
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.7 bits (66), Expect = 0.19
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 289 LYPPLLSTVSDDMA--DNAVYNRQIXT-ESGWDNPFRPDGDLSREADEIVSLIK 441
L P + TVS ++ + A+YN Q+ + +S DN F D DLSR +VSL++
Sbjct: 502 LPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLR 555
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 448 KP-ITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 576
KP +TP PP AP H ++++ S+P +P T S
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANS 767
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 528 IRFSLFLLVFVSRQLWSRDRWSWSDGLAALD 436
I +FL+++V+ +LWSR+ WS+ + +D
Sbjct: 491 ITLPIFLVLYVAHKLWSRN-WSFGKRIEEID 520
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 473 TGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLSVXICLLYTALSAISSLT 312
+GG V LPP + E S+ + +K G HP + + T A + LT
Sbjct: 211 SGGKNVKALPPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLDQARAVLT 264
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 460 PTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVASPVLQTTPKA 603
PT AP LP + ++ + S+PA+ ASPV + P A
Sbjct: 180 PTASANAP-LPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPA 226
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 491 GNCGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLS-HPLSV 360
G C G G P L + I S + KS SGR LS +P SV
Sbjct: 74 GFCNGTGGSASCTGCPAL-NNRIRSLNASKSQSGRKSLSPNPSSV 117
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 457 TPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 576
T T P A P+ P EKA N S+P S T S
Sbjct: 419 TSTMPEALPREPLSFSLPEKAPEKATNISIPESAPTTAGS 458
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 432 AHQGRQAHHSNSTGRGSTVAD 494
AH GR HHSNS ST D
Sbjct: 71 AHLGRFTHHSNSLIHASTKED 91
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 507 LVFVSRQLWSRDRWSWSDGLAALD 436
LV +Q+WS WSW D L+ D
Sbjct: 2066 LVHGIQQIWSAILWSWGDLLSKKD 2089
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 643 VPPPLPRHSLFRSLLSEWSVVPDLPLSFVETQG 545
+P P + L +LL + VPD+PL T G
Sbjct: 406 MPKPSVKEELQENLLVSSTSVPDVPLKIESTVG 438
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 444 ALDERDYLVRFTAQVAIRTERIIPSA 367
ALD R +LVRF + +I T + +PS+
Sbjct: 539 ALDIRTHLVRFLNKFSIPTAQRLPSS 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,013
Number of Sequences: 5004
Number of extensions: 54404
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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