Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C06
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 35 0.067
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 35 0.067
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 33 0.20
SB_1696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_4528| Best HMM Match : Antistasin (HMM E-Value=8.4) 29 3.3
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) 29 4.4
SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27) 29 4.4
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 29 4.4
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0) 29 4.4
SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7) 28 5.8
SB_1837| Best HMM Match : Big_4 (HMM E-Value=8.1) 28 5.8
SB_42959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 34.7 bits (76), Expect = 0.067
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 451 PITPTPPVAAPQLPTDEHKEEKAEANNVN-ASLPASPQTKVASPVLQTTPKAMNGTKNG- 624
P+TPT AAP PT A A V + PA+P T A+P + TP A T
Sbjct: 55 PVTPTAAPAAPVTPT------AAPAARVTPTAAPAAPVTPTAAPAARVTPTAARVTPTAA 108
Query: 625 -AAVVEARAGP 654
AA V A P
Sbjct: 109 PAAPVTPTAAP 119
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 34.7 bits (76), Expect = 0.067
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 451 PITPTPPVAAPQLPTDEHKEEKAEANNVN-ASLPASPQTKVASPVLQTTPKAMNGTKNG- 624
P+TPT AAP PT A A V + PA+P T A+P + TP A T
Sbjct: 212 PVTPTAAPAAPVTPT------AAPAARVTPTAAPAAPVTPTAAPAARVTPTAARVTPTAA 265
Query: 625 -AAVVEARAGP 654
AA V A P
Sbjct: 266 PAAPVTPTAAP 276
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 397 GDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 576
GD + AD+++ ++KG + P A+ + E + +++ + S+P SP+T A
Sbjct: 149 GDATISADDLLKVLKGDSKLVPNNGDASASCASPESVSDGEVSSSESCSVP-SPETPTAV 207
Query: 577 PV 582
PV
Sbjct: 208 PV 209
>SB_1696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 241 PQCLSPPPTAEQDSYILYPPLLSTVSDDMADNAVYNRQIXTESGW 375
P C+ +Q +L P + +SDD D+ V+ I GW
Sbjct: 33 PHCIRRRRAQQQQIRVLPTPTVIVISDDDDDDVVHGPVINYRDGW 77
>SB_4528| Best HMM Match : Antistasin (HMM E-Value=8.4)
Length = 118
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 341 TALSAISSLTVDSRGGYKM*ES-CSAVGGGDRHCG 240
TA + ++ L VDSRG + S C+ VG GDR CG
Sbjct: 68 TASAKLACLQVDSRGSPAIRHSGCATVGKGDR-CG 101
>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
Length = 667
Score = 28.7 bits (61), Expect = 4.4
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +1
Query: 259 PPTAEQDSYILYPPLLSTVSDDMADNAVYNRQIXTESGWDNPFRPDGDLSREADEIVSLI 438
P T+ QD PP L VS + + N + Q + + +P R D E ++ V +
Sbjct: 197 PGTSPQD-----PPALIQVSGERSPNVIGRVQRTSGNYMYSPPRTILDEEPEPEDFVMVP 251
Query: 439 KG-GKPI-TPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVASPVLQTTPKAMN 609
K P T +PP ++P L + +A + S P +P+T+ S + +P + +
Sbjct: 252 KNIDIPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQS 310
>SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +1
Query: 352 QIXTESGWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANN 531
++ TE D+PF L + +VS++KGG P P Q P + + + +
Sbjct: 462 ELKTEEKKDDPFTRRKTLPK----LVSMVKGGAPGMTQPISTEAQPPAADMQYDAGYRGH 517
Query: 532 VNASLPASPQTKVASPVLQTTP 597
++++ A+ T + VL +P
Sbjct: 518 LDSTTRATVVTLIERRVLPWSP 539
>SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27)
Length = 314
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 143 RCTNCKFIFT*SDRIKTSAQLLQGFVYSTLRNCFPTTSISXEVARGS 3
RC C + + SD I +S + + G CF S EVARGS
Sbjct: 88 RCGECLTVIS-SDLINSSPKDIDGLSLLECPECFNKFSHKAEVARGS 133
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 143 RCTNCKFIFT*SDRIKTSAQLLQGFVYSTLRNCFPTTSISXEVARGS 3
RC C + + SD I +S + + G CF S EVARGS
Sbjct: 231 RCGECLTVIS-SDLINSSPKDIDGLSLLECPECFNKFSHKAEVARGS 276
>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1038
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 485 CGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLS 363
CG AT VM LP MS ++ +PS LSHP+S
Sbjct: 351 CGLATP-FNVMSLPHPMSCRYPIQCQVATPSNVKSLSHPMS 390
>SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)
Length = 357
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 427 VSLIKGGKPITPTPPVAAPQLPTDEHKEEKAEANNVNAS-LPASPQTKV 570
++L G KP +PT P A + + EEK+E A+ + QTK+
Sbjct: 17 LALAVGKKPTSPTKPKAFKKKMIESSDEEKSEKEKTPATPTKSQSQTKI 65
>SB_1837| Best HMM Match : Big_4 (HMM E-Value=8.1)
Length = 213
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 244 QCLSPPPTAE-QDSYILYPPLLSTVSDDMADNAVYNRQIXTESGWDNP 384
Q LSP PT + + L P LLST D D R++ E NP
Sbjct: 117 QFLSPVPTVKIPEDTALPPQLLSTPISDQIDGERAARRVSWEPAESNP 164
>SB_42959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 451 PITPTPPVAAPQLPTDEHKEEKA-EANNVNASLPASPQ 561
P+TP P APQ PT++ ++A + N +N PA+PQ
Sbjct: 82 PVTPQP---APQ-PTNQMPPQQANQFNQINQYQPATPQ 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,622,491
Number of Sequences: 59808
Number of extensions: 467393
Number of successful extensions: 1627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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