Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C06
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.21 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -2

Query: 537 VNIIRFSLFLLVFVSRQLWSRDRWSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALRX 358
           V+ + F +  L F     W +  W W  G+  L  R Y+   ++ V++ T  I+  ++  
Sbjct: 77  VSDLLFLILGLPFELSVFWQQYPWQWGLGICKL--RAYVSETSSYVSVLT--IVAFSIER 132

Query: 357 NLSVVHSVIRH 325
            L++ H  +RH
Sbjct: 133 YLAIYHP-LRH 142


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 511 EKAEANNVNASLPASPQTKVASPVLQTTPKAMNGTKNGAAVV 636
           ++++A + +AS PA+  T  A+  L        G    +AVV
Sbjct: 204 DESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVV 245


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 457 TPTPPVAAPQLPTDE 501
           +P    A PQLPT+E
Sbjct: 447 SPATTAAPPQLPTEE 461


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 316 SDDMADNAVYNRQIXTESGWDNP 384
           +D   D  V+N Q+ + +G+ NP
Sbjct: 177 TDGKHDYRVWNHQLISYAGYKNP 199


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 470 GGVGVMGLPP 441
           GG+GV+ LPP
Sbjct: 96  GGIGVLRLPP 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,174
Number of Sequences: 438
Number of extensions: 4186
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)