Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C02
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   1.4  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   3.3  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   3.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   5.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   5.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   5.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.7  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 219 PNQNICASGEASQPDPAVXLIKQRLSNVKHKILIL 323
           P Q+I  SG  +QP   V   K+ L+    +  +L
Sbjct: 26  PQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVL 60


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 312 ILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADIC 431
           +++++GK  V   T  + I + L S + +    +L A++C
Sbjct: 243 LILITGKSIVQLLTCLNFITNNLKSENEEFKEKLLAANLC 282


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 312 ILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADIC 431
           +++++GK  V   T  + I + L S + +    +L A++C
Sbjct: 243 LILITGKSIVQLLTCLNFITNNLKSENEEFKEKLLAANLC 282


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 382 ARPCPISDVTVLFPTP 335
           A P P S +T L+P+P
Sbjct: 311 ATPTPTSVMTELYPSP 326


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 111 RQIVISNMSSVPDNAP 158
           RQ V+ N+SSVP   P
Sbjct: 177 RQHVMHNLSSVPQPQP 192


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 111 RQIVISNMSSVPDNAP 158
           RQ V+ N+SSVP   P
Sbjct: 177 RQHVMHNLSSVPQPQP 192


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 111 RQIVISNMSSVPDNAP 158
           RQ V+ N+SSVP   P
Sbjct: 177 RQHVMHNLSSVPQPQP 192


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 172 PGQCCGALSGTLLIFDI 122
           PG+CC    G L   DI
Sbjct: 101 PGRCCKTCPGDLYDSDI 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,235
Number of Sequences: 336
Number of extensions: 2247
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)