Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C02
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 140 7e-35
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 58 5e-10
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 28 0.63
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 27 1.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 2.5
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 2.5
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.5
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 5.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.9
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 140 bits (340), Expect = 7e-35
Identities = 64/112 (57%), Positives = 83/112 (74%)
Frame = +3
Query: 138 SVPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVXLIKQRLSNVKHKIL 317
+VP +AP+HCPG SE+AG ASAC GCPNQ ICAS + DP + L+ +RL +KHKIL
Sbjct: 6 TVPLDAPEHCPGPSSENAGTASACEGCPNQQICASAPRGE-DPDLPLVVERLKEIKHKIL 64
Query: 318 ILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGVRGEQ 473
+LSGKGGVGKST +S + GL S+ D +G++D DICGPS PR++GV E+
Sbjct: 65 VLSGKGGVGKSTFSSQLAWGL-SLEEDKQIGLMDVDICGPSIPRIMGVEKEE 115
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 58.4 bits (135), Expect = 5e-10
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +3
Query: 291 LSNVKHKILILSGKGGVGKSTVTSLIG---HGLASMSPDINVGILDADICGPSQPRVLGV 461
+ V+H IL+LSGKGGVGKS+VT+ + H S + GILD D+ GPS PR+ G
Sbjct: 1 MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60
Query: 462 RGEQ 473
E+
Sbjct: 61 DAER 64
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 0.63
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 261 DPAVXLIKQRLSNVKHKILILSGKGGVGKSTVT 359
DP ++ L K + + GKGGVGK+T +
Sbjct: 4 DPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTS 36
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 297 NVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILD 419
N+ H L++SG G+GK+T + H L + P G+L+
Sbjct: 53 NMPH--LVISGMPGIGKTTSILCLAHAL--LGPAYKEGVLE 89
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 309 KILILSGKGGVGKSTVTSLIGHGLASMSPDIN 404
+I++L+G G GK+T+ +I H +IN
Sbjct: 417 RIMMLTGLAGAGKTTLAHVIAHQAGYKVLEIN 448
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 264 PAVXLIKQRLSNVKH-KILILSGKGGVGKST--VTSLIGHGLASMSPDI 401
PA ++ + ++H +++++SG+ G GKST V ++ H L+S D+
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDL 626
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 151 TRRNIALELKARMLVKLQPVLDAL 222
++RNI L L+ RM++++ P D+L
Sbjct: 2054 SKRNILLNLEHRMMLQMAPDCDSL 2077
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 321 LSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGV 461
L+G+ G+GKST+ + ++ I + ++ ++ G P + V
Sbjct: 213 LTGRNGIGKSTLLRALSRREIAIPTHITILHVEQEMTGDDTPALQSV 259
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 306 HKILILSGKGGVGKSTVTSLI 368
+K ++LSG G+GK+T L+
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLV 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,992
Number of Sequences: 5004
Number of extensions: 37393
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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