Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C02
(475 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.069
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 32 0.21
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 31 0.49
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15) 29 1.5
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_51278| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08) 28 3.4
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 28 4.5
SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015) 27 6.0
SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31) 27 7.9
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 27 7.9
SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022) 27 7.9
SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5) 27 7.9
>SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 33.9 bits (74), Expect = 0.069
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +3
Query: 282 KQRLSNVKHKILILSGKGGVGKSTVTS-----LIGHGLASMS 392
K ++ VK IL+ SGKGGVGKST L+ G+ MS
Sbjct: 59 KWPIAGVKQVILVASGKGGVGKSTTAENQMKPLVNFGMPCMS 100
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 144 PDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQP 260
P PQ+CP + A KA AC C +GEA QP
Sbjct: 312 PSQLPQNCPAGEEVAASKA-ACQPCAAGEYSNTGEACQP 349
>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
Length = 280
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 291 LSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICG 434
L K + +++SG+ G GK+ T LI H L ++S ++ I G
Sbjct: 227 LKEKKSQCIVISGESGSGKTESTKLIVHHLTALSRKTQASDVEKTILG 274
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 321 LSGKGGVGKSTVTSLIGHGLAS 386
L +GGVGKST T+ + HGLA+
Sbjct: 243 LQTQGGVGKSTFTAHLAHGLAA 264
>SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)
Length = 415
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 267 AVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDAD 425
A+ I ++ N K +L ++G GG GKS++ + P+ +G++ D
Sbjct: 70 ALDTIHKKNKNSKTPVLGITGTGGAGKSSLVDELVRRFLIDFPEKTIGLISVD 122
>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +3
Query: 216 CPNQNICASGEASQPDPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSP 395
C N A G DPA L+ R+ +H+++I + G G + +L + +++P
Sbjct: 47 CKNLASMARGTVRDVDPADDLLILRVRTKEHEVIIAPERTGDGTFFIVAL--QSIRNVAP 104
Query: 396 DINVGIL 416
+ ++ +L
Sbjct: 105 EGSIALL 111
>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 120 VISNMSSVPDNAPQHCPGTQSEDAGKASACAGCP 221
+I + + PD P+ T ED+ + CAGCP
Sbjct: 1213 IIGRVEADPDYLPRKKDFTVDEDSFRMKFCAGCP 1246
>SB_51278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 28.7 bits (61), Expect = 2.6
Identities = 32/120 (26%), Positives = 43/120 (35%), Gaps = 2/120 (1%)
Frame = +3
Query: 81 ENLGFKRINSRQIVISNMSSVPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQP 260
+ LG+ R+ S A CP +SE A A A P A G +
Sbjct: 24 QRLGYTRVGPSAPFGSPARHGMHQAYPGCPAPRSERARDNRAAAPPPPPQRFARGNLAIR 83
Query: 261 DPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVG--ILDADICG 434
P+V +R + K L+ K K + GH L P G ILD D+ G
Sbjct: 84 HPSVLWYTERSKDEVRKGLLRVAKDRPRKHVRPEVHGH-LQGAPPKAPAGPNILDEDVHG 142
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 312 ILILSGKGGVGKSTVTS-LIGHGLASMSPDIN 404
+++LSGKGG GK+ V S ++ + +SP+ N
Sbjct: 457 VVVLSGKGGCGKTYVVSKVLSEANSHISPNSN 488
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 306 HKILILSGKGGVGKSTVTSLIGHGLASMSP 395
H+++++SG+ G GK+ T + LA+ +P
Sbjct: 63 HQVIVISGESGAGKTESTKQLVQYLATANP 92
>SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08)
Length = 349
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 439 LGPQMSASSIPTFISGLIDARPCPISDVTVLFPTP 335
+GP++SAS IP I + A P P + L +P
Sbjct: 289 IGPRLSASPIPATIGPPLSASPIPATTAPPLSASP 323
>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 303 KHKILILSGKGGVGKSTVTSLIGHGLAS 386
K K +++ GK GVGKST+ S + + A+
Sbjct: 162 KTKRILIEGKAGVGKSTLVSEMAYDWAT 189
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 261 DPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPS 440
D A+ L+ + KIL LSG +G +T+ +++ +P +G LD CG
Sbjct: 838 DSALSLVTLIQESALLKILNLSGNPSLGNTTLHAIL--NTLMDTPLSQLGTLDLSSCGVR 895
Query: 441 QP 446
P
Sbjct: 896 SP 897
>SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015)
Length = 437
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +3
Query: 210 AGCPNQNICASGEAS-----QPDPAVXLIKQRLSNVKHKILILSGKGGVGK--STVTSLI 368
A PN N SG+ + + + + +K++L + KI +S + S S +
Sbjct: 98 ASSPNVNNVVSGDCNCNGEIEEESKIETVKEKLGHSFEKIEAVSVETRTENNLSDFESTV 157
Query: 369 GHGLASMSPDINVGILD 419
G G AS+ N+G+LD
Sbjct: 158 GDGSASVDHIPNIGVLD 174
>SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 336 GVGKSTVTSLIG---HGLASMSPDINVGILDADICGPSQPRVLG 458
GVG TV L H + ++SPD+ + + + PS+P VLG
Sbjct: 62 GVGGRTVDKLQAYDLHVVQNLSPDVVILEIGTNNLPPSKPEVLG 105
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 168 PGTQS--EDAGKASACAGCPNQNICASGEAS 254
PGT + D A+ C CP + C GEAS
Sbjct: 648 PGTYTVRSDLYDAAQCTVCPERYYCLGGEAS 678
>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
Length = 491
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Frame = +3
Query: 99 RINSRQIVISNMSSVPD----NAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQP 260
R++ R+I M +P N H +ED+GK G P GE +P
Sbjct: 25 RVSKRKINEKEMLGIPSQHQRNKTVHLEAVTNEDSGKRYKKQGIPMAAFARGGETGRP 82
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 309 KILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGP 437
K ++L+G G+GK+T+ S + LAS G +I GP
Sbjct: 52 KHVLLTGPPGIGKTTLCSKVKQALASRGVPTQ-GFYTEEIRGP 93
>SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022)
Length = 178
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 466 PRTPNTRGWLGPQMSASSIPTFISGLIDARPCPISDVTVLFPTPP 332
P+TP + G + IP+ SG + P P +V +L PT P
Sbjct: 46 PQTPPAKLIKGLPLPPRIIPSNTSGRVLDEPVPEINVPILKPTQP 90
>SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 321 LSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADI 428
L G G GKSTV SLI M+ +I +G D DI
Sbjct: 191 LVGPSGGGKSTVISLIERFYDPMTGNIRIG--DTDI 224
>SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)
Length = 307
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -1
Query: 460 TPNTRGWLGPQMSASSIPTFISGLIDARPCPISDVTVLFPTPPLPDK 320
TP T G GP ASS + A P S T L PT PL +K
Sbjct: 164 TPTTGGPSGPTGGASSATPSATTASTAPPTTPS-TTTLAPTTPLSEK 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,392
Number of Sequences: 59808
Number of extensions: 307443
Number of successful extensions: 873
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -