Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_C02
(475 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50960.1 68418.m06320 nucleotide-binding family protein simil... 136 5e-33
At4g19540.1 68417.m02874 expressed protein 51 5e-07
At3g24430.1 68416.m03066 expressed protein contains Pfam profile... 48 2e-06
At5g24020.1 68418.m02822 septum site-determining protein (MIND) ... 36 0.019
At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical t... 33 0.099
At5g05000.3 68418.m00531 translocate of chloroplast 34 (TOC34) /... 32 0.17
At5g05000.2 68418.m00530 translocate of chloroplast 34 (TOC34) /... 32 0.17
At5g05000.1 68418.m00529 translocate of chloroplast 34 (TOC34) /... 32 0.17
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ... 31 0.40
At3g54950.1 68416.m06092 patatin-related low similarity to patat... 31 0.40
At1g01910.2 68414.m00109 anion-transporting ATPase, putative sim... 30 0.92
At1g01910.1 68414.m00108 anion-transporting ATPase, putative sim... 30 0.92
At3g10350.1 68416.m01241 anion-transporting ATPase family protei... 29 1.2
At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR ... 29 1.6
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ... 29 1.6
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ... 29 1.6
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 29 1.6
At2g32850.2 68415.m04025 protein kinase family protein contains ... 29 1.6
At2g32850.1 68415.m04024 protein kinase family protein contains ... 29 1.6
At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR ... 29 1.6
At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containi... 28 2.8
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate... 28 2.8
At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SD... 28 3.7
At5g25420.1 68418.m03016 xanthine/uracil permease family protein... 27 4.9
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 27 4.9
At5g04310.1 68418.m00423 pectate lyase family protein similar to... 27 4.9
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu... 27 4.9
At2g16790.1 68415.m01925 shikimate kinase family protein similar... 27 4.9
At1g71890.1 68414.m08311 sucrose transporter / sucrose-proton sy... 27 4.9
At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla... 27 4.9
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla... 27 4.9
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR... 27 4.9
At2g27820.1 68415.m03373 prephenate dehydratase family protein 27 6.5
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR... 27 8.6
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ... 27 8.6
>At5g50960.1 68418.m06320 nucleotide-binding family protein similar
to Nucleotide-binding protein 1 (NBP 1) (SP:Q9R060) [Mus
musculus]; contains Pfam PF00991 : ParA family ATPase
Length = 350
Score = 136 bits (330), Expect = 5e-33
Identities = 61/111 (54%), Positives = 82/111 (73%)
Frame = +3
Query: 141 VPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVXLIKQRLSNVKHKILI 320
+P++A +HCPG QSE AGK+ +CAGCPNQ CA+ PDP + I +R+S VKHKIL+
Sbjct: 6 IPEDANEHCPGPQSESAGKSDSCAGCPNQEACATAPKG-PDPDLVAIAERMSTVKHKILV 64
Query: 321 LSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGVRGEQ 473
LSGKGGVGKST ++ + LA M D VG++D DICGPS P++LG+ G++
Sbjct: 65 LSGKGGVGKSTFSAQLSFALAGM--DHQVGLMDIDICGPSIPKMLGLEGQE 113
>At4g19540.1 68417.m02874 expressed protein
Length = 313
Score = 50.8 bits (116), Expect = 5e-07
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 288 RLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGV 461
RL VK I + SGKGGVGKS+ + LA+ ++ +G+LDAD+ GPS P ++ +
Sbjct: 38 RLHGVKDIIAVASGKGGVGKSSTAVNLAVALANKC-ELKIGLLDADVYGPSVPIMMNI 94
>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
PF01883: Domain of unknown function
Length = 532
Score = 48.4 bits (110), Expect = 2e-06
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +3
Query: 228 NICASGEASQPDPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINV 407
N+ S + ++P A L LS + + I + S KGGVGKSTV + + LA M V
Sbjct: 152 NVTMSAQPAKPIFAGQL-PFGLSRISNIIAVSSCKGGVGKSTVAVNLAYTLAGMG--ARV 208
Query: 408 GILDADICGPSQPRVL 455
GI DAD+ GPS P ++
Sbjct: 209 GIFDADVYGPSLPTMV 224
>At5g24020.1 68418.m02822 septum site-determining protein (MIND)
identical to MinD [Arabidopsis thaliana] GI:6759277;
contains Pfam PF00991 : ParA family ATPase
Length = 326
Score = 35.5 bits (78), Expect = 0.019
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 312 ILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADI 428
++I SGKGGVGK+T T+ +G LA +V +DAD+
Sbjct: 61 VVITSGKGGVGKTTTTANVGLSLARYG--FSVVAIDADL 97
>At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical to
atToc33 protein (GI:11557973) [Arabidopsis thaliana];
Carboxyl-terminal end highly similar to GTP-binding
protein SP:U43377, location of EST gb|AA394770 and
gb|R30089; identical to cDNA for chloroplast atToc33
protein GI:11557972
Length = 297
Score = 33.1 bits (72), Expect = 0.099
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 282 KQRLSNVKHKILILSGKGGVGKS-TVTSLIGHGLASMSP 395
K + ++ +++ GKGGVGKS TV SLIG + +SP
Sbjct: 28 KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
>At5g05000.3 68418.m00531 translocate of chloroplast 34 (TOC34) /
GTP-binding protein (OEP34) contains Pfam PF04548: AIG1
family;contains TIGRFAM TIGR00991: GTP-binding protein
and TIGR00231: small GTP-binding protein domain; 99.7%
identical to atToc34 protein (GI:11557975) [Arabidopsis
thaliana]; similar to Chain A, Pea Toc34 - A Novel
Gtpase Of The Chloroplast Protein Translocon
(GI:1865556) [Pisum sativum]; almost identical to
SP:Q38906 Translocase of chloroplast 34; identical to
cDNA GTP-binding protein (OEP34) GI:1151243
Length = 313
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 249 ASQPDPAVXLIKQRLSNVKHKILILSGKGGVGK-STVTSLIGHGLASMS 392
A+Q L K + +V +++ GKGGVGK STV S+IG A++S
Sbjct: 19 ATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVS 67
>At5g05000.2 68418.m00530 translocate of chloroplast 34 (TOC34) /
GTP-binding protein (OEP34) contains Pfam PF04548: AIG1
family;contains TIGRFAM TIGR00991: GTP-binding protein
and TIGR00231: small GTP-binding protein domain; 99.7%
identical to atToc34 protein (GI:11557975) [Arabidopsis
thaliana]; similar to Chain A, Pea Toc34 - A Novel
Gtpase Of The Chloroplast Protein Translocon
(GI:1865556) [Pisum sativum]; almost identical to
SP:Q38906 Translocase of chloroplast 34; identical to
cDNA GTP-binding protein (OEP34) GI:1151243
Length = 313
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 249 ASQPDPAVXLIKQRLSNVKHKILILSGKGGVGK-STVTSLIGHGLASMS 392
A+Q L K + +V +++ GKGGVGK STV S+IG A++S
Sbjct: 19 ATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVS 67
>At5g05000.1 68418.m00529 translocate of chloroplast 34 (TOC34) /
GTP-binding protein (OEP34) contains Pfam PF04548: AIG1
family;contains TIGRFAM TIGR00991: GTP-binding protein
and TIGR00231: small GTP-binding protein domain; 99.7%
identical to atToc34 protein (GI:11557975) [Arabidopsis
thaliana]; similar to Chain A, Pea Toc34 - A Novel
Gtpase Of The Chloroplast Protein Translocon
(GI:1865556) [Pisum sativum]; almost identical to
SP:Q38906 Translocase of chloroplast 34; identical to
cDNA GTP-binding protein (OEP34) GI:1151243
Length = 313
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 249 ASQPDPAVXLIKQRLSNVKHKILILSGKGGVGK-STVTSLIGHGLASMS 392
A+Q L K + +V +++ GKGGVGK STV S+IG A++S
Sbjct: 19 ATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVS 67
>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 843
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 285 QRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGI 413
+ L ++++L + G GGVGK+T+ +LI + +S D +V I
Sbjct: 169 ESLRKDENRMLGIFGMGGVGKTTLLTLINNKFVEVSDDYDVVI 211
>At3g54950.1 68416.m06092 patatin-related low similarity to patatin
[GI:169500][Solanum tuberosum]; contains Patatin domain
PF01734
Length = 488
Score = 31.1 bits (67), Expect = 0.40
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 252 SQPDPAVXLIKQRLSNVKHKILILS----GKGGVGKSTVTSLIGHGLASMSPDINVGILD 419
S+P+PA ++ + N + KI ILS G G+ + + H L S S D N I D
Sbjct: 78 SKPEPANSVVAGSIKNQRGKICILSIDGGGMRGILPGKALAYLEHALKSKSGDPNARIAD 137
>At1g01910.2 68414.m00109 anion-transporting ATPase, putative
similar to SP|O43681 Arsenical pump-driving ATPase (EC
3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
(ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
Anion-transporting ATPase
Length = 353
Score = 29.9 bits (64), Expect = 0.92
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 309 KILILSGKGGVGKSTVTSLIGHGLASMSPDI 401
K + + GKGGVGK+T +S++ LAS+ +
Sbjct: 20 KWVFVGGKGGVGKTTCSSILAICLASVRSSV 50
>At1g01910.1 68414.m00108 anion-transporting ATPase, putative
similar to SP|O43681 Arsenical pump-driving ATPase (EC
3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
(ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
Anion-transporting ATPase
Length = 353
Score = 29.9 bits (64), Expect = 0.92
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 309 KILILSGKGGVGKSTVTSLIGHGLASMSPDI 401
K + + GKGGVGK+T +S++ LAS+ +
Sbjct: 20 KWVFVGGKGGVGKTTCSSILAICLASVRSSV 50
>At3g10350.1 68416.m01241 anion-transporting ATPase family protein
similar to SP|O43681 Arsenical pump-driving ATPase (EC
3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
(ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
Anion-transporting ATPase; contains non-consensus GA
donor splice site at intron 5
Length = 411
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 252 SQPDPAVXLIKQRLSNVKHKILILSGKGGVGKST 353
+ P + + +S K K +L GKGGVGK++
Sbjct: 69 ASPTETISEFDEMVSGTKRKYYMLGGKGGVGKTS 102
>At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 888
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 261 DPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGI 413
DP + RL + IL L G GGVGK+T+ S I + + + + ++ I
Sbjct: 159 DPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVI 209
>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 276 LIKQRLSNVKHKILILSGKGGVGKSTVTSLIGH 374
L+ + N H+++ ++G GG+GK+T+ + H
Sbjct: 175 LVGHLVENDVHQVVSIAGMGGIGKTTLARQVFH 207
>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 276 LIKQRLSNVKHKILILSGKGGVGKSTVTSLIGH 374
L+ + N H+++ ++G GG+GK+T+ + H
Sbjct: 175 LVGHLVENDVHQVVSIAGMGGIGKTTLARQVFH 207
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 312 ILILSGKGGVGKSTVTSLIGHGLASMSPDINVGI 413
+L + G GGVGK+T+ S I + ++S D ++ I
Sbjct: 177 LLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAI 210
>At2g32850.2 68415.m04025 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 670
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 282 KQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGV 461
++ L V +I +L K G V +L HG+ M + +L D CG S VL
Sbjct: 64 EESLELVMKEISVL--KSLKGHPNVVTLYAHGILDMGRNKKEALLAMDFCGKSLVDVLEN 121
Query: 462 RG 467
RG
Sbjct: 122 RG 123
>At2g32850.1 68415.m04024 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 650
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 282 KQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGV 461
++ L V +I +L K G V +L HG+ M + +L D CG S VL
Sbjct: 64 EESLELVMKEISVL--KSLKGHPNVVTLYAHGILDMGRNKKEALLAMDFCGKSLVDVLEN 121
Query: 462 RG 467
RG
Sbjct: 122 RG 123
>At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 941
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 270 VXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGI 413
V + + L N + + L L G GGVGK+T+ + I + + + +V I
Sbjct: 248 VEMAWKSLMNDEIRTLCLHGMGGVGKTTLLACINNKFVELESEFDVVI 295
>At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 208 VLDALIKTFAHLEKHLNLT 264
V D+L KTFAHL+K N T
Sbjct: 170 VFDSLFKTFAHLKKFRNAT 188
>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
similar to menaquinone biosynthesis protein menD
[SP|P17109][E. coli] ; Pfam HMM hit:
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
acid synthase / 2-oxoglutarate decarboxylase
Length = 894
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 213 GCPNQNICASGEAS--QPDPAVXLIKQRLSNVKHKILILSGKGG 338
GC + +C G+ S + ++KQR++ IL+++ +GG
Sbjct: 814 GCKKRVVCVVGDISFLHDTNGLAILKQRIARKPMTILVINNRGG 857
>At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from {Forsythia x intermedia};
similar to sex determination protein tasselseed 2
SP:P50160 from [Zea mays]
Length = 279
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 315 LILSGKGGVGKSTVTSLIGHGLASMSPDI--NVGILDADICGPS 440
LI G G+GK+T I HG + DI +G GPS
Sbjct: 20 LITGGASGIGKATAGKFISHGAKVIIADIQPQIGRETEQELGPS 63
>At5g25420.1 68418.m03016 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 419
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 433 PQMSASSIPTFISGLIDARPCPISDVTVLF 344
PQ + +S T +GLI PCP D+T F
Sbjct: 245 PQTTQTSCRTDRTGLITNTPCPTFDITDSF 274
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 309 KILILSGKGGVGKSTVTSLIGHGLASMSPDIN 404
K ++LSG G+GK+T L+ L + ++N
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVN 425
>At5g04310.1 68418.m00423 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 518
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 255 QPDPAVXLIKQRLS-NVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADI- 428
QP+P + + +KH+++I S K G+ T + GHG ++ +V I + I
Sbjct: 158 QPEPLWIIFSSDMGIKLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIH 217
Query: 429 -CGPS 440
C PS
Sbjct: 218 HCKPS 222
>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1233
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 252 SQPDPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLI 368
S+PD V + L+ KI+ L G G GKSTV SLI
Sbjct: 372 SRPD-VVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLI 409
>At2g16790.1 68415.m01925 shikimate kinase family protein similar to
thermosensitive glucokinase from Escherichia coli
[SP|P39208] [SP|P46859]; contains Pfam profile PF01202:
shikimate kinase
Length = 189
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 294 SNVKHKILILSGKGGVGKSTVTSLIGHGLA 383
++V K++ + G G GKST+ ++G L+
Sbjct: 5 NDVTGKVIAIMGVSGAGKSTIGKMLGKALS 34
>At1g71890.1 68414.m08311 sucrose transporter / sucrose-proton
symporter (SUC5) nearly identical to sucrose transporter
[Arabidopsis thaliana] GI:12057172
Length = 512
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 445 GWLGPQMSASSIPTFISGLIDARPCPISDVTVLFPTPPLPD 323
G L Q ++P+F+ G I A + +TVL P+PP PD
Sbjct: 463 GPLDAQFGGGNLPSFVVGAIAAAVSGVLALTVL-PSPP-PD 501
>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 429
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 303 KHKILILSGKGGVGKSTVTSLIGHGLASMS 392
K KI+ +SG G+GKST+ + H L S S
Sbjct: 219 KVKIVGISGPAGIGKSTIARAL-HNLLSSS 247
>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 762
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 288 RLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGI 413
RL + I+ L G GGVGK+T+ I + A MS ++ I
Sbjct: 55 RLMEDRVGIMGLHGMGGVGKTTLFKKIHNKFAKMSSRFDIVI 96
>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 897
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 291 LSNVKHKILILSGKGGVGKSTVTSLIGHGLASM 389
L N KI+ +SG G+GKST+ + + L++M
Sbjct: 202 LKNDGVKIVGISGPAGIGKSTIATALHGRLSNM 234
>At2g27820.1 68415.m03373 prephenate dehydratase family protein
Length = 424
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 156 PQHCPGTQSEDAGKASA--CAGCPNQNICASGEASQPDPAVXLIKQRLSNVKHKILILSG 329
P H P T + A + CAG + + + +S + ++ ++++ + + S
Sbjct: 6 PSHTPATVTTAARRRHVIHCAGKRSDSFSINSSSSDWQSSCAILSSKVNSQEQSESLSSN 65
Query: 330 KGGVGKSTVTSLIGHGLASMSPDINV 407
G V+++ GH + D+N+
Sbjct: 66 SNGSSSYHVSAVNGHNNGAGVSDLNL 91
>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 997
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 291 LSNVKHKILILSGKGGVGKSTVTSLIGHGLAS 386
L N + K++ +SG G+GKST+ + H L S
Sbjct: 203 LDNDEVKMVAISGPAGIGKSTIGRAL-HSLLS 233
>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 906
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 276 LIKQRLSNVKHKILILSGKGGVGKSTVTSLIGH 374
L+ + N +++ +SG GG+GK+T+ + H
Sbjct: 173 LVDHLVENDSVQVVSVSGMGGIGKTTLARQVFH 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,103,203
Number of Sequences: 28952
Number of extensions: 202103
Number of successful extensions: 716
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -